Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0288 ATGGAGCCATTGTCTTCTGCTTCATCTTCTATGGCTTCAGAACAAGTGCACGTGAGATCACGTGCTCCTTTTGCTGGTCTTGTTATATGTGTCACTGGTCTCTCTAAAGAAGCAAGGAATCAAGTCATGGAGGCTACACAGAGATTGGGTGGTCAGTATAGTCCCAATTTGAATCCACAATGTACCCATTTGGTGTTACTAGTTCAGTTCTGTCATGAAATCCTTAACACTAGGTACAGCTTTGGTGGACGCAAGTTTGACCATGCGCTGAAGCATGGAGCAAAAAGTGGTCTCTTCATCGTCACATTAGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTGACGTTGAGCGAATCACATTACAGGGTGAAGAGTTATGGGGATAACAATATGCGCTTAGATGAAAATTCTTTTCTTCCTGCAAAAATCCGTGAAACCAAGCATGCTAATAATGTTGAAGAAATTCAAAGATTCTCTGGGAGAGAGTCTAACAGAAGTTCGGACTTAACTTTGTCTGGTTGTTCCATCTATGTTGATGCATGCATTTCATGTGAATTGCGAAACAAGGTTGTTGAAAGTGCCTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGTTGCAATGTTAGTCATGTAGTGACTGAAGGGACATCCATCCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCACTGTGGATTCTCAAAACAGTTAAGGCGAAAAACATGCAAAGGCTTGTTCATATGTCTGCTGATTTGGCAAGGCAAGTTGGCTTGTTGCTTGAAAACAATAATGACATTTCAGGGAAGGAAGTAATAAAACAAAAAGTCCATGGCGATCTACATGGCGGCAAAAGTGAAGTTAGTTACAAAGAAAGACAACAGATTGTGAATTCTGCCAAAATTGATGTCAGAAATCGGCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACGCCCAACAACCTTCTGGACTCCATTTGCTGGTCAATATCTGAACCAACTTCAAGTGCTTCCATTTACACAGACTCTTCCAGTGTTGAAGATCCAAATCATAATCCCACTTCAACATTTTTTGATGCAAAAGACAATGGCAAGGACCCAGAAGCTTCATTTTCAAACTCCACTCGTCCACTGACAGAAAGTGAGAAATCTGAGTTAATATTCAAAAACCATTTTTTAACTGTACTCTTTCCAATCGACCGATTTTCTGAGATGGGTCCTTCATCAAGAACATTTTTCAGCAATAATGGTTTTACATGTCTTCAGGTGTTGGATTATATACATGCATTTTATGAGGAAAACATGTCAAAGGAAGAAACAGAAGCTGCAATTCACACTGATTCAAGACATGCAGATAGGCTTAGATCAGTGTACTCTAGTAAGGAAACAACACAGAGTGGCTATGTGATTTTCAAGAGGATTGAATTCTTGGGTAGTTGTATAAGTTTTGAAATGTTGAAACGTGTAACTGGGGACAACAACTCCAATGTATATGAACTATTACTTAGGGCATAA 1539 0.399 MEPLSSASSSMASEQVHVRSRAPFAGLVICVTGLSKEARNQVMEATQRLGGQYSPNLNPQCTHLVLLVQFCHEILNTRYSFGGRKFDHALKHGAKSGLFIVTLGWFVDSVRKNVTLSESHYRVKSYGDNNMRLDENSFLPAKIRETKHANNVEEIQRFSGRESNRSSDLTLSGCSIYVDACISCELRNKVVESASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTVKAKNMQRLVHMSADLARQVGLLLENNNDISGKEVIKQKVHGDLHGGKSEVSYKERQQIVNSAKIDVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISEPTSSASIYTDSSSVEDPNHNPTSTFFDAKDNGKDPEASFSNSTRPLTESEKSELIFKNHFLTVLFPIDRFSEMGPSSRTFFSNNGFTCLQVLDYIHAFYEENMSKEETEAAIHTDSRHADRLRSVYSSKETTQSGYVIFKRIEFLGSCISFEMLKRVTGDNNSNVYELLLRA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0288 512 MobiDBLite consensus disorder prediction 347 385 - -
Lal21g0288 512 ProSiteProfiles BRCT domain profile. 166 246 IPR001357 -
Lal21g0288 512 MobiDBLite consensus disorder prediction 347 367 - -
Lal21g0288 512 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 5 512 - -
Lal21g0288 512 Pfam twin BRCT domain 27 93 IPR001357 -
Lal21g0288 512 SMART BRCT_7 21 113 IPR001357 -
Lal21g0288 512 SMART BRCT_7 168 244 IPR001357 -
Lal21g0288 512 CDD BRCT_TopBP1_rpt2_like 23 113 - -
Lal21g0288 512 Gene3D BRCT domain 22 125 IPR036420 -
Lal21g0288 512 SUPERFAMILY BRCT domain 21 124 IPR036420 -
Lal21g0288 512 ProSiteProfiles BRCT domain profile. 19 123 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0288 Lal-Chr21 1909786 1915030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0288 23 123 Core DNA Replication Machinery Family AT1G77320 34.653 3.06e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0288 - - gmx:100815253 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0288 21 1909786 1915030 Lal21g0288 21 1909786 1915030 ECH
Lal17g0177 17 1071171 1076011 Lal21g0288 21 1909786 1915030 LSH