Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0287 ATGGGTTCATCGGAGTTTCATCAACACGATTCTCATTCTCTTTCTTCCAACAGTCCTAAGCTCATTGACCCTAGAAGTTATCAATTGGAGGTGTTTGAAGTTGCAAAGAAGAGGAATACAATAGCAGTGTTGGATACAGGTTCTGGTAAAACTTTGGTAGCTGTGATGCTCATAAAAGAAGCTCATAAAGCTATCAAATCTAGTCACATTAAAAAGTTGATTGTTTTCTTAGCTCCCACTGTTAATCTTCAATTTAAACATATTAAAGATCTTACAGGTTTTAAAGTTGAGGAGTACTATGGGGCTAAAGGAGTGGATACATGGGATTTAAAGATCTGGGAGAAGGAGATTAGTGACAATGATGTACTGGTTATGACACCCCAAATTCTTCTGGATGCTTTAAGAAAGGCATTCTTAAGTATAGAAATGATATGCTTGATGATTATTGATGAATGTCACAGAGCAACAGGCAAACATCCCTATTCAAAAATAATGGAAGAGTTCTATCACAAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTAGGCAAAAAAGTCGGTGTTTCCTCTACCAAGGGCTGTGAGGGTCAAATATCAGAACTTGAATACATCATGGATTCTCAGAGATATACTGTTGAAGATAGGAAAGAAATCGATATACATATCCCTTCTGCAAAAGAGAGTTGTAGATATTATGACCAAGCACAATACCCTGTGTTGAGGTTGAAGTCAAAGATTGAAGCCTTGTTCCAGTCCAATGCATTGTTCTCGGAATTGCAAAGTTTGGCACAAAGTGAGGATGTGGATTATAAATTTAGGAAACTGCATAATGGGATGTTCAACAAACTTGAAAAAATATTTTATTGCCTTGAAGATCTTGGATTCCTATGTGCTTATGAGGCTGCTAAAATCTATCATGAAATTTTTTCCAAAATTAAAGGAGGCTGTGAAGTTTACAGAAAAGCTTCTCTCCAATGTAAAATTTTCATGGAAAAAGTAATGCAATTAATTGAAGAATCCCTCCATCTTGATGACAAAAATAATTTGGAGGTTGAATTTGATTATTCAAAGGCGGTAGAGTTGAAATATATATCTCCAAAATTACTTGAACTTATTAAAATCTTCCAGTCGTTTGGAGAATCTATTCAGATGTCATGTCTCATTTTTGTTGAAAGAAAACTTACAGCTAAGTTATTAGAAAAAATTGTAAAGAAAGTATCCCAGATATCTCATTTCACAGTTTCCTATATAACTGGAGGCAATACAGCAGTCGATGCACTGACTCCTAAGAAGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAGAGGTCAATCTATTAATTACTACTGATGTAGCTGAGGAAGGAATTCATGTGCCGAACTGCTCTTGTGTGATACGTTTTGACCTACCCAAGACAGTTCGTAGTTATGTCCAATCTCGGGGAAGATGTAGGCAGCCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAGCTTTTTGACATCATCAGGAGTGAGCGCTCCATGACTAACGCAGCTACTAATAAAGACAACAATGCTTCTAATTTAAGGGTGTTTACTGTAGGGAAAACAAATGCATACCATGTGAATTCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTGGACTTATAAATCGATATTGCGAAAAGCTACCACATGATAAGTACTCCCGTGTGAAGCCCACTTTTGAGTTTCAGCCTATGGGAGGGGGTTACACATGTAAGTTAACATTGCCGCCTAATGCAGCTTTCCAAATAATAGTTGGTCCCTCAGGAAAAGATGTTCATTTGGCAAGGCATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGAACATCTTGTCCCTCTCATTAAAGAAGAGCCTTCAGAAGCTGATTGTATTGTGAAAAACAAAGAATCAAGTTCCGGTGCAGGAAGTGGAACCACAAAAAGAAAGGAGTTACATGGCACAACCAGCATTCGTGCATTATGTGGTACATGGGGAGGCAAACTTGATGGCACGAAATTTCATGCCTATAAGTTTGATTTCACATGTAATATTGTCAGTGAAATTTACTCTGGGTTTGTTCTGCTGGTTGAGTCAAAGCTTGATGATGATGTGGGAAATATGGAGTTAGATCTTTATTTAATCTCAAAGATCGTGAAGGCTTCTGTCTCTTCATGTGGGCAAGTTGACCTGGATGCTGAACAGATGATGAATGCTAAATGCTTCCAAGAGTTTTTTTTCAATGGTTTGTTTGGGAGGTTAGTTCTTCGGTCTAAATCAGCAGCAAGGGGAGGAAGGGAGTTTTTACTTCAAAAAGACACAAACACATTATGGAGCCCAACATACTTGTATTTGCTTCTACCACTTGAGAAACTGGATGATTCATGTATGGGATCATTGACAATAAATTGGTCTGGAATCAATTCTTGTGCTTCTGCTATTGAGTTTTTAAGGAAGAAGTTTTTGTTGGTTGCTGGAGATTGTTGTAATGATAGTGAAGACACAAAAATCACGTCACCTTGTGATACCAGTCCAATGGAGGTGGAATGTCAGGATAAAAATAAGATTTACTTTGCTAATTGTATCCTCGATGTTAATAATCTAAAAGATGTGATAGTTTTGGCCATTCACACTGGGAGAATCTATTGTATTGTTGAATTAGATATCAACTTATCTGCTGAAAGTCCCTTTGATGGCAACGATGAAAAGTCTGGGGGTGAACAGATAACATTCTCAGATTACTACAAAAAAAGGTATGGCATTACACTGAGACATCCAAGGCAACCTTTGTTACGTTTGAAGCAAAGTCATAATGCACACAATCTTCTTTTGAACTTCCACGAGGAAGATGGTCGGGACAAGACATCACAAACTGGCCTTACACAATCAAAGATGCCTGCCCATGTTTACATTCCACCTGAGCTTCTCTATGTTCTTGATGTTAAAAGAGACATTTTGAGGTCAATGTACTTGCTACCATCACTGATGCATCATCTTCAATCATTCATGTTATCCAGTCAGCTTAGAGAAGAGATAGGTGGCCAAACTAACAATTTCAACATTCCTAGCTCTCTGATTCTAGAAGCAATTACAACTTTGAGATGTTCTGAAAAATATTCAATGGAACGTCTTGAGTTGCTTGGAGATTCTGTTCTGAAATATGCGGTAAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGGCATGCGATCGCTGGCTGTTTGTAATTCAACCCTACATAAACGGGCAACAGATCACAAATTGCAGGAGTATATCCGAGACTCAGCATTCGAGCCACGCCGTTGGGTTGCTCCAGGACAGATATCCATACACCCTGTTTTTTGTGAATGTGGGTTGGAAACCCAAGAAGTGCCTTTAGATGGAAAGTTCCATACCGAAGATCCGAAAGTTGTGGTTGGGAAGTTATGTGACAAGGGTCACCGCTGGATGTGTTCAAAGACTATTGCTGATTGTGCTGAAGCTCTGATAGGAGCATACTATGTGGGTGGTGGATTAATTGCTGCACTTCATGTGATGAAGTGGCTTGGGATTAATGCTGAACTTGAACCTTCTTTGGTTGATGAAGCCATAACTGCTGCATCTCTCCATGCATATGTGCCAAAAGTTAGAGAGATTGGTAGCCTTGAAATGAAAATTGGCTATGAATTTTCCATCAAGGGACTCCTACTGGAGGCAATGACACATGTGTCCGAGAAAGAAGTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCAGTACTGGACCTGCTTATCACACGCCATCTTTATCAGAGCCACACAGATATTGATCCAGGAGAATTGACTGACTTGCGTTCCGCTTCTGTCAGTAACGAAAATTTTGCTCAAGTTGCTGTAAGAAGAAACCTTCACCTGCACCTTTTGCATGGCTCAGAATTATTGCTGAGCCAGATTGCAGATTATGTAAAGGTCATTTCTGAATCAGAGAACAATACTAGATCATTCCTAGGCATTAGAGCTCCCAAGCCACTTGGAGATCTAGTCGAAAGTATTGCTGGGGCTATGCTAATTGATACCAAGCTCAATATTGACCAAGTGTGGAAAGTTTTCAACCCTTTGCTATCTCCAATTGTTACTCCTGATAAACTTGAACTGCCTCCGTGGCGTGAATTGAATGAATTATGTGACTCTCTCCGGTGTTTTGTGAAAGAAAGTTGTGCAAAGAAAGGACCCATGGTGCATGCCACACTTAGTGTGCAGTTGCATGATACCTTGTTGGTTCGGGAGGGAAAGGGGCAAAATGCAAAAACTGCAAAAGGAGAAGCTGCTCTTCATTTGTTGAAAGACCTTGAGAAGAGAGGAATTTCATATAGCAGTAGCGTGTCAAAGAGAAAAAGAGATACTTTTGGTCTTAGTGATGAAAATTCTTCGAAGCCGATAGCACAGGCAGCATATAAAAGGCACAAAGTGGATGAAACTAACTTAACTGAAAATGCACGTACTGATTTGCTGCCTCTCAAAGACACTTCCATGGAAGCTTCTAACCTTGGTGCTTCTGTTCCAGTTATTGGCTCAATTAATATGAAGAAGGGAGGACCTAGGAGCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCTGAATTTGATTCAACAGAATATAAGGATAGAACTCTATTCCAAGGGTGTGAAGGCCTGGAAGGAAGCAAGGGACAAAACTGTTTCGTGTCGAAAATTAGCTTAATCATACCCAATGGTACCGCGCTAGAATGTGAAGGAGAAGCTAGAGCTGATAAGAAGACCTCACATGACTCTGCTGCACTTCATATGCTTTATGAGCTACAACGGCTGGGAAAACTTAAGATAACTGGTCCCCCTACCCTTTCTGTTTCTTCAAAGTAA 4980 0.396 MGSSEFHQHDSHSLSSNSPKLIDPRSYQLEVFEVAKKRNTIAVLDTGSGKTLVAVMLIKEAHKAIKSSHIKKLIVFLAPTVNLQFKHIKDLTGFKVEEYYGAKGVDTWDLKIWEKEISDNDVLVMTPQILLDALRKAFLSIEMICLMIIDECHRATGKHPYSKIMEEFYHKANEKPKIFGMTASPVGKKVGVSSTKGCEGQISELEYIMDSQRYTVEDRKEIDIHIPSAKESCRYYDQAQYPVLRLKSKIEALFQSNALFSELQSLAQSEDVDYKFRKLHNGMFNKLEKIFYCLEDLGFLCAYEAAKIYHEIFSKIKGGCEVYRKASLQCKIFMEKVMQLIEESLHLDDKNNLEVEFDYSKAVELKYISPKLLELIKIFQSFGESIQMSCLIFVERKLTAKLLEKIVKKVSQISHFTVSYITGGNTAVDALTPKKQKEILDSFRSGEVNLLITTDVAEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRCRQPNSQFIVMLERGNLKQRNQLFDIIRSERSMTNAATNKDNNASNLRVFTVGKTNAYHVNSTGASVTLDSSVGLINRYCEKLPHDKYSRVKPTFEFQPMGGGYTCKLTLPPNAAFQIIVGPSGKDVHLARHLVCLEACKKLHQMGALNEHLVPLIKEEPSEADCIVKNKESSSGAGSGTTKRKELHGTTSIRALCGTWGGKLDGTKFHAYKFDFTCNIVSEIYSGFVLLVESKLDDDVGNMELDLYLISKIVKASVSSCGQVDLDAEQMMNAKCFQEFFFNGLFGRLVLRSKSAARGGREFLLQKDTNTLWSPTYLYLLLPLEKLDDSCMGSLTINWSGINSCASAIEFLRKKFLLVAGDCCNDSEDTKITSPCDTSPMEVECQDKNKIYFANCILDVNNLKDVIVLAIHTGRIYCIVELDINLSAESPFDGNDEKSGGEQITFSDYYKKRYGITLRHPRQPLLRLKQSHNAHNLLLNFHEEDGRDKTSQTGLTQSKMPAHVYIPPELLYVLDVKRDILRSMYLLPSLMHHLQSFMLSSQLREEIGGQTNNFNIPSSLILEAITTLRCSEKYSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSGMRSLAVCNSTLHKRATDHKLQEYIRDSAFEPRRWVAPGQISIHPVFCECGLETQEVPLDGKFHTEDPKVVVGKLCDKGHRWMCSKTIADCAEALIGAYYVGGGLIAALHVMKWLGINAELEPSLVDEAITAASLHAYVPKVREIGSLEMKIGYEFSIKGLLLEAMTHVSEKEVGIGCCYERLEFLGDSVLDLLITRHLYQSHTDIDPGELTDLRSASVSNENFAQVAVRRNLHLHLLHGSELLLSQIADYVKVISESENNTRSFLGIRAPKPLGDLVESIAGAMLIDTKLNIDQVWKVFNPLLSPIVTPDKLELPPWRELNELCDSLRCFVKESCAKKGPMVHATLSVQLHDTLLVREGKGQNAKTAKGEAALHLLKDLEKRGISYSSSVSKRKRDTFGLSDENSSKPIAQAAYKRHKVDETNLTENARTDLLPLKDTSMEASNLGASVPVIGSINMKKGGPRSTLYELCKRLQWPLPEFDSTEYKDRTLFQGCEGLEGSKGQNCFVSKISLIIPNGTALECEGEARADKKTSHDSAALHMLYELQRLGKLKITGPPTLSVSSK 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0287 1659 Gene3D - 20 256 IPR027417 -
Lal21g0287 1659 CDD SF2_C_dicer 367 499 - -
Lal21g0287 1659 Gene3D - 1563 1642 - -
Lal21g0287 1659 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 7 1645 - -
Lal21g0287 1659 SUPERFAMILY PAZ domain 886 1001 IPR036085 GO:0005515
Lal21g0287 1659 Pfam PAZ domain 885 1021 IPR003100 GO:0005515
Lal21g0287 1659 SMART helicmild6 397 489 IPR001650 -
Lal21g0287 1659 Pfam Dicer dimerisation domain 559 645 - -
Lal21g0287 1659 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 31 203 IPR014001 -
Lal21g0287 1659 ProSiteProfiles Ribonuclease III family domain profile. 1026 1198 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 505 IPR027417 -
Lal21g0287 1659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 529 IPR001650 -
Lal21g0287 1659 Pfam Helicase conserved C-terminal domain 383 488 IPR001650 -
Lal21g0287 1659 PANTHER DICER-RELATED 7 1645 - -
Lal21g0287 1659 Gene3D - 361 526 IPR027417 -
Lal21g0287 1659 ProSiteProfiles Ribonuclease III family domain profile. 1239 1384 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 SMART ultradead3 20 222 IPR014001 -
Lal21g0287 1659 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 559 649 IPR005034 GO:0016891
Lal21g0287 1659 Gene3D paz domain 874 999 - -
Lal21g0287 1659 Pfam Ribonuclease III domain 1063 1197 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 Pfam Ribonuclease III domain 1275 1383 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 CDD RIBOc 1255 1405 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 CDD DEXHc_dicer 24 218 - -
Lal21g0287 1659 SMART PAZ_2_a_3 864 1025 IPR003100 GO:0005515
Lal21g0287 1659 CDD RIBOc 1045 1209 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 ProSiteProfiles PAZ domain profile. 888 1001 IPR003100 GO:0005515
Lal21g0287 1659 SUPERFAMILY RNase III domain-like 1029 1216 IPR036389 GO:0004525|GO:0006396
Lal21g0287 1659 ProSitePatterns Ribonuclease III family signature. 1275 1283 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 Gene3D Ribonuclease III domain 1023 1210 IPR036389 GO:0004525|GO:0006396
Lal21g0287 1659 Gene3D Ribonuclease III domain 1217 1404 IPR036389 GO:0004525|GO:0006396
Lal21g0287 1659 SMART riboneu5 1045 1218 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 SMART riboneu5 1254 1407 IPR000999 GO:0004525|GO:0006396
Lal21g0287 1659 Gene3D Dicer dimerisation domain 554 650 IPR038248 -
Lal21g0287 1659 Pfam Type III restriction enzyme, res subunit 35 185 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lal21g0287 1659 SUPERFAMILY RNase III domain-like 1240 1404 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0287 Lal-Chr21 1894522 1908970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0287 415 487 Eukaryotic Initiation Factors Gene Family AT3G19760 40.541 3.90e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0287 K11592 - gmx:100806831 2299.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0287 21 1894522 1908970 Lal21g0287 21 1894522 1908970 ECH