Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0279 ATGGAAGGAAGTGTTGTCTACAATCATCGCACGGTGGAGGAAGTCTTCTCCGATTTCAAAGGCCGCAGAACTTCCATTATCAACGCCCTTACCACTGATGTCCAACACTTCTTTCAACAATGTGATCCCGTTGATTTGCATGAGCTTTGTGACACAGACAAAGAAAATCTTTGCCTTTATGGATTTCCTACTGAACACTGGGAAGTCAATCTGCCTGCCGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGTTTTGGGTATTAACTTTGCAAGAGATGGGATGCAACAAAAGGACTGGCTTACCTTGGTTGCGGTCCATAGTGATGCATGGTTACTTTCTGTAGCATTTTATTTCGGTGCCAAGTTTGGATTTGATAAGGCTGATAGGAAACGACTGTTTACTATGATAAATGATCTTCCAACTATATCTGAGGTTGTCTCAGGGTTGGCCAAGAAACAGGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAACCTAAATCAAACTCTAAGAGGGGTTCTGAACCTCAAGCTAAGAATTCCAGAGCAATGCAATTAAAAGATGAGGATGAGAACGGTTTTGAAGAGGAAGATGAGGAGGAAAACGGAGAGACTAATTGTGGGGCATGTGGAGAGAACTATATAACTGGCCAGTTCTGGATCTGTTGTGATGTATGTGAGAGGTGGTTCCATGGAAAGTGTGTCAAAATTACACAGGCAAGGGCTGATCATATCAAAATCTACAAATGTCCATCTTGCAGCCACAAGAGATCTCGACCTTTACCGTGA 795 0.4314 MEGSVVYNHRTVEEVFSDFKGRRTSIINALTTDVQHFFQQCDPVDLHELCDTDKENLCLYGFPTEHWEVNLPAEEVPPELPEPVLGINFARDGMQQKDWLTLVAVHSDAWLLSVAFYFGAKFGFDKADRKRLFTMINDLPTISEVVSGLAKKQGKEKSSVSNHSSNKPKSNSKRGSEPQAKNSRAMQLKDEDENGFEEEDEEENGETNCGACGENYITGQFWICCDVCERWFHGKCVKITQARADHIKIYKCPSCSHKRSRPLP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0279 264 PANTHER CPG BINDING PROTEIN 3 262 IPR045104 GO:0006355|GO:0042393
Lal21g0279 264 ProSiteProfiles Zinc finger PHD-type profile. 206 258 IPR019787 -
Lal21g0279 264 SUPERFAMILY FYVE/PHD zinc finger 198 261 IPR011011 -
Lal21g0279 264 MobiDBLite consensus disorder prediction 192 207 - -
Lal21g0279 264 MobiDBLite consensus disorder prediction 153 207 - -
Lal21g0279 264 ProSitePatterns Zinc finger PHD-type signature. 209 255 IPR019786 -
Lal21g0279 264 SMART PHD_3 208 256 IPR001965 -
Lal21g0279 264 CDD PHD_AL_plant 209 258 IPR044104 -
Lal21g0279 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 262 IPR013083 -
Lal21g0279 264 MobiDBLite consensus disorder prediction 159 183 - -
Lal21g0279 264 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 262 - -
Lal21g0279 264 Pfam PHD-finger 209 257 IPR019787 -
Lal21g0279 264 Pfam Alfin 11 147 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0279 Lal-Chr21 1847545 1850781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0279 3 261 Alfin-like Transcription Factor Family AT3G42790 66.923 1.05e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal21g0279 Alfin 1.5e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0279 - - pop:7476667 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0279 21 1847545 1850781 Lal21g0279 21 1847545 1850781 ECH
Lal21g0279 21 1847545 1850781 Lal4g0178 4 1117072 1121114 ECH
Lal17g1508 17 16461772 16466748 Lal21g0279 21 1847545 1850781 ECH
Lal4g1532 4 19424366 19428781 Lal21g0279 21 1847545 1850781 ECH
Lal21g0279 21 1847545 1850781 Lal4g0178 4 1117072 1121114 LSH