Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0272 ATGTCTTTCCAGCAGGTGTCACCGATAAATGCCACAATGGTGGCGGTTGACAAAGACAAGAATAGTGCTTATGCATTCCGTTGGGCAATTAATCATCTTGATAACCCTGTCATCATTGCTGTCCATGTCAAACACAAAAACCTTCATCATAATGGGGGCACAAATGTTCATCCACCTGATGAAGAAGACATGGCCAATATTTTCAGTGCCTTGCGTGGAATGTGTAATCGAAAAGCTGTGGAGGTGAAAGAAGCAGTAATAGATGATATTGATATTGTTAGAGGACTTCAAGAATATGCACACAGGAATCTAATACATAGTATTGTTGTTGGTGCATCCAGGAACCCTTTATCAAGTTTCAAAAAATTGAAAGGCTATGATGTACCAACAGCTATGCTCAAAACAGCCCCAGATTATAGTTCTGTATATGTGATTTCCAAATGGAAGATTGTGCAAGCTCGATCAGCGATTCGCCAAATGACAAACGCGCCTGTCCCACCGAAAAACCCATTAGTGCAGGCAATGCCATATAATGAATCAGAAAATGGAATAAGGACACCACCACATCATCCAAATGGAATATCTTATGATAAGAACAATAATGTATCTAGAAGACCAAGGAGTGCTGGAAGTAATCAATCAATGGACCATATTATTGAAATAGCATCGCGTTCAAGACATGTGTCAATGGATGAAAAAGATATTTCAGGGCTTATGCCATTGGATTTAACTAAACAGGATATGGATTTATCAGATTCCCATGGTTATTCACCAAAATCCCAATCCACACACGAAATGGAAGCTGAGATGAAGAGATTGAGGCTTGAGCTGAAGCAAACTATGGATATGTACAGCTCAGCTTGCAAACAAGCAATCTCAGCCAAAAATCAGGCTGAACAAATTCGCCAATGGAAACTGAAAGAGGAACGTATGGTCGAAGAATCAAGGTTGTCTCAAAAGGCAGCTCTTGCAATGGCAGCACAGGAGAAGTTAAAAGCCATAGTTGCATGGGAAGAAGCTGAGGAAGCAAGGAAGAGGGCTGAACAGGAAGCACAAAAAAGAAGGGAAGCAGAAATGAAGGCTAAGAAAGAGTCAGAAGAGAAGGATCAGGTATTAAACGCGCTAGCTCGAAGTGATAATCGATATAGAAGATACACCATAGAGGAGATTGAAGCAGCTACTGATCAGTTCTCTTCATCAAAGAAAATAGGTGAAGGAGGATATGGACCTGTGTATAAAGGCAAACTTGATCACACCCCGGTTGCAATCAAAATCCTCAGCCCTGATGCTTCTCAGGGCAGGAAACAGTTTCAACAGGAGGTTGAGGTACTATGCCGCATTAGACATCCTAATATGGTGCTCCTCCTTGGTGCTTGTCCTGAGTATGGGTGCTTGGTGTATGAACACATGGAAAATGGTAGCTTAGATGACAGATTGTTTAGAAGAAATAACAGTCCACCTCTTTCTTGGAGGTTAAGGTTCCAAATATCTGCTGAGATTTCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCAGAACCTCTTGTGCATAGAGACCTTAAACCAGGAAACATTTTATTGGATAAGAATTATGTCAGTAAAATTGCTGATGTTGGTCTTGCAAGATTAGTCCCTCCTTCTGTAGCTGATACTGTTACACAATATTACATGACTTCAGCTGCTGGAACCTTTTGCTACATTGATCCTGAGTATCAAAGTTCTGGAATGTTAACACCAAAATCAGATATATATTCATTTGGGATAATGCTACTGCAAATAATTACAGCTAAGCCTGCTATGGGACTAGCTCATCAAGTTAAAAGGGCAATTGAAAAGGACAAGTTTTCCGAGATACTTGACCCTGCTGTCACTGATTGGCCTGTTGAAAAGGCTCTTGAATTTGCCAAATTAGCATTGGATTGTGCAGAGCTCAGCAAGAAGGACAGGCCAGATCTTGCAACAGTTGTATTACCGACGCTTTGTCGGTTAAGAGATTTTGGAAATGCTTCACACAGGAATCGAGTTTTTTGCAGCGTCGATCAAATGCATAGCTATGTTGACCACCATCTTTCTTCTACATCATCAAATCTAAATTCAAAGACTCTAAGTACAAGCTAG 2118 0.4079 MSFQQVSPINATMVAVDKDKNSAYAFRWAINHLDNPVIIAVHVKHKNLHHNGGTNVHPPDEEDMANIFSALRGMCNRKAVEVKEAVIDDIDIVRGLQEYAHRNLIHSIVVGASRNPLSSFKKLKGYDVPTAMLKTAPDYSSVYVISKWKIVQARSAIRQMTNAPVPPKNPLVQAMPYNESENGIRTPPHHPNGISYDKNNNVSRRPRSAGSNQSMDHIIEIASRSRHVSMDEKDISGLMPLDLTKQDMDLSDSHGYSPKSQSTHEMEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLKEERMVEESRLSQKAALAMAAQEKLKAIVAWEEAEEARKRAEQEAQKRREAEMKAKKESEEKDQVLNALARSDNRYRRYTIEEIEAATDQFSSSKKIGEGGYGPVYKGKLDHTPVAIKILSPDASQGRKQFQQEVEVLCRIRHPNMVLLLGACPEYGCLVYEHMENGSLDDRLFRRNNSPPLSWRLRFQISAEISTALLFLHQTKPEPLVHRDLKPGNILLDKNYVSKIADVGLARLVPPSVADTVTQYYMTSAAGTFCYIDPEYQSSGMLTPKSDIYSFGIMLLQIITAKPAMGLAHQVKRAIEKDKFSEILDPAVTDWPVEKALEFAKLALDCAELSKKDRPDLATVVLPTLCRLRDFGNASHRNRVFCSVDQMHSYVDHHLSSTSSNLNSKTLSTS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0272 705 Pfam Protein tyrosine and serine/threonine kinase 400 656 IPR001245 GO:0004672|GO:0006468
Lal21g0272 705 MobiDBLite consensus disorder prediction 181 212 - -
Lal21g0272 705 ProSiteProfiles Protein kinase domain profile. 397 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0272 705 MobiDBLite consensus disorder prediction 193 212 - -
Lal21g0272 705 SUPERFAMILY Protein kinase-like (PK-like) 381 656 IPR011009 -
Lal21g0272 705 SMART serkin_6 397 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0272 705 Coils Coil 263 283 - -
Lal21g0272 705 PANTHER OS02G0152300 PROTEIN 11 695 - -
Lal21g0272 705 Coils Coil 337 374 - -
Lal21g0272 705 Gene3D HUPs 2 137 IPR014729 -
Lal21g0272 705 MobiDBLite consensus disorder prediction 348 369 - -
Lal21g0272 705 CDD STK_N 14 147 - -
Lal21g0272 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Lal21g0272 705 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 11 695 - -
Lal21g0272 705 Gene3D Phosphorylase Kinase; domain 1 365 469 - -
Lal21g0272 705 Gene3D Transferase(Phosphotransferase) domain 1 470 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0272 Lal-Chr21 1807414 1810797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0272 84 667 Receptor kinase-like Gene Family AT5G12000 57.166 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal21g0272 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0272 - - gmx:100798861 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0272 21 1807414 1810797 Lal21g0272 21 1807414 1810797 ECH
Lal17g0159 17 974467 978515 Lal21g0272 21 1807414 1810797 LSH