Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0259 ATGGAGGAATACAATAACAGTAATAATCATATAAGAGAAAACACTGGTCGAGTTCCAAGGGAAAATTTCTTGTACACCAGTGCAGTTGGTGGTTCAAGCGAAGGAAACCATCTTCATCATCATCATCATCAATTTCCTATCAACACCTTTCATTTTCAATCGGGTGGATCGGGTCACAGTTTTCAACCCGAACAGGTACCTTATGATTCTAATGTGAAAAATGAATCCAATAACATCACCTCGCAGCACCTACAAACTCCGATTTTCCACTATCCCTTATTGAGAGGAAATATTCTACATCCCCATCCAACTCAGCATGGAGGGAGCCATAGCTCTAACGAAGTTGAAGAAGATATTAAAGCCAAAATCATTGCTCATCCTCAGTACTCTAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTATGGCTGCAGCTCAACAAGATTTTGAGGCACGACAACGATCTTCAGTTAGGTCTAATCTGGAACCTTCCAAGGACCCTGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATAGAGATGAACTAACAAGGCCTACACAAGAGGCCATGGATTTCATGCGAAAGATAGAAACTCAGCTCAATATGCTTTGCAATGAAAATGGACCCCTGCGGATCTTCTCTGATGATAAATATGAAGGGGTTGGTTCATCTGAAGAGGATGAATACAATAGTGGTGGGGAAACAGAACTTTCCGTGATTGATCCCCAAACAGAAGATCGTGAACTCAAAAATCATTTGCTGAGGAAGTATAGTGGTTACTTAAGTAGCCTCAAGCAAGAACTTTCAAAGAAAAAGAAAAAAGGAAAACTGCCTAAAGATGCAAGACAGAAGCTACTTAGTTGGTGGGAATTACATTACAAATGGCCATACCCTTCGGAATCAGAGAAGGTGGCATTAGCTGAATCAACTGGATTGGACCAGAAACAAATAAATAACTGGTTCATAAATCAAAGGAAGCGACACTGGAAACCATCTGAAGACATGCAATTTATGGTCATGGATGGCCTTCATTCGCATAACGCAGCTGTTTTCATGGCTGATGGACATTTCCATTTAGGGCCATAA 1131 0.412 MEEYNNSNNHIRENTGRVPRENFLYTSAVGGSSEGNHLHHHHHQFPINTFHFQSGGSGHSFQPEQVPYDSNVKNESNNITSQHLQTPIFHYPLLRGNILHPHPTQHGGSHSSNEVEEDIKAKIIAHPQYSNLLQVYMDCQKVGAPPEVVARMAAAQQDFEARQRSSVRSNLEPSKDPELDQFMEAYYDMLVKYRDELTRPTQEAMDFMRKIETQLNMLCNENGPLRIFSDDKYEGVGSSEEDEYNSGGETELSVIDPQTEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHSHNAAVFMADGHFHLGP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0259 376 MobiDBLite consensus disorder prediction 236 259 - -
Lal21g0259 376 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Lal21g0259 376 CDD homeodomain 295 347 IPR001356 GO:0003677
Lal21g0259 376 SUPERFAMILY Homeodomain-like 284 358 IPR009057 -
Lal21g0259 376 SMART KNOX2_2 169 220 IPR005541 GO:0003677|GO:0005634
Lal21g0259 376 ProSitePatterns 'Homeobox' domain signature. 321 344 IPR017970 GO:0000981|GO:0006355
Lal21g0259 376 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
Lal21g0259 376 Pfam ELK domain 263 284 IPR005539 GO:0003677
Lal21g0259 376 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 369 - -
Lal21g0259 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 369 - -
Lal21g0259 376 Gene3D - 288 350 - -
Lal21g0259 376 SMART ELK_2 263 284 IPR005539 GO:0003677
Lal21g0259 376 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Lal21g0259 376 Pfam KNOX1 domain 119 159 IPR005540 GO:0003677|GO:0005634
Lal21g0259 376 Pfam KNOX2 domain 173 219 IPR005541 GO:0003677|GO:0005634
Lal21g0259 376 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Lal21g0259 376 SMART HOX_1 285 350 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0259 Lal-Chr21 1729050 1733801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0259 69 376 Homeobox Transcription Factor Family AT4G08150 66.978 2.42e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal21g0259 KNOX2 5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0259 - - gmx:100807602 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0259 21 1729050 1733801 Lal21g0259 21 1729050 1733801 ECH