Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0258 ATGTCTTTTGATCATATCTCTAACCCAGAGCTTAGACTTGGTCTTGGCCTAGGCCTTGATTATCAGTTTTCAGAGAATTGTGTGAAGACGGGTGAATACAGACAGAAGAAAAAGGAGAAGGATCCAACAAAATGCAATAAGGCATACCCATCTCTTACATTAGGACCATCTAAGGATGATGAAGCAAATAATCAAATAGCTACAAAGACTGAATCAGATGAATATTTTCATCCACAGACCTCTTCTCCAAGTGCAGTGTCTTCATTTTCAAATTCTTCTAGCATCATCAAGAGGGAGAGAGATCAGTTCGAAGTTGAAGAATTTGAGATAGAAGAAGAGAGGAATCCATCAAGGGATGTTGTTATTGATGAAGAAAATGGTAATCCCAGGAAGAAACTCAGGCTCAACAAAGAACAATCAGCAGTCTTAGAAGATAGTTTCAAAGAACATTCTACTCTCAATCCGATCCAAAAGCAAGAACTAGCAAGGAAGCTGAAACTGCGGGCGAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCCAGGACAAAACTGAAACAAACCGAAGTGGACCTTGAGTTACTGAGGCAGTCCTGTGAAAATCTAACTGAGGAAAACAAGAGGCTGCAAAAGGAGTTGCAAGATCTTAAGTCAATTAAAACGACACCGTATATTACTATTATTTGTCCCTCTTGTGAGCGAATTTGTGGCGGAAATGGAAGCAGCAATAATGGCTCTTCTCCAACAACGACGTTGCTCCGAAAAGCTCATAATCACTTGTGCAAAAGCAATTATTCATTCACTCAATCATCCGCAGCTTGCTAG 825 0.4048 MSFDHISNPELRLGLGLGLDYQFSENCVKTGEYRQKKKEKDPTKCNKAYPSLTLGPSKDDEANNQIATKTESDEYFHPQTSSPSAVSSFSNSSSIIKRERDQFEVEEFEIEEERNPSRDVVIDEENGNPRKKLRLNKEQSAVLEDSFKEHSTLNPIQKQELARKLKLRARQVEVWFQNRRARTKLKQTEVDLELLRQSCENLTEENKRLQKELQDLKSIKTTPYITIICPSCERICGGNGSSNNGSSPTTTLLRKAHNHLCKSNYSFTQSSAAC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0258 274 MobiDBLite consensus disorder prediction 31 93 - -
Lal21g0258 274 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Lal21g0258 274 MobiDBLite consensus disorder prediction 57 93 - -
Lal21g0258 274 Pfam Homeobox associated leucine zipper 186 218 IPR003106 GO:0006355|GO:0043565
Lal21g0258 274 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 273 - -
Lal21g0258 274 Gene3D - 123 191 - -
Lal21g0258 274 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Lal21g0258 274 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Lal21g0258 274 CDD homeodomain 129 187 IPR001356 GO:0003677
Lal21g0258 274 SUPERFAMILY Homeodomain-like 127 196 IPR009057 -
Lal21g0258 274 MobiDBLite consensus disorder prediction 31 45 - -
Lal21g0258 274 PANTHER - 3 273 - -
Lal21g0258 274 Coils Coil 178 219 - -
Lal21g0258 274 SMART HOX_1 128 190 IPR001356 GO:0003677
Lal21g0258 274 Pfam Homeodomain 130 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0258 Lal-Chr21 1722286 1724378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0258 109 235 Homeobox Transcription Factor Family AT4G16780 60.870 3.08e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal21g0258 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0258 K09338 - gmx:100790927 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0258 21 1722286 1724378 Lal21g0258 21 1722286 1724378 ECH