Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0256 ATGGGTAGGGCACCTTGTTGTGATAAAGCAAACGTGAAGAGAGGTCCTTGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATTGAAAAACATGGTACCGGAGGAAACTGGATCGCTTTGCCACAAAAGATAGGCCTTAAGCGATGTGGTAAGAGTTGCCGTCTAAGGTGGCTAAACTATCTTCGCCCTAATATCAAGCATGGGGGTTTCACTGAAGAAGAAGACAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGGTGGTCAGTGATTGCAGCTCAATTGCCAGGAAGGACCGACAATGATATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCATCGTAAGGAACAACAACAAGCACGTAATAGTAGAAGCAATGGTTTTGTTGTTAAGCAAGAAAGCAATAGAGTGAGTGGTGATTCCTCCTCATCTTTGGTTCCTCAAAATGGTACTCAGCAACAGCTATATTGGCCACAGATGCCAGTGCTACCACCATCGTTGCAATATACAAACCAAGGTCCAAGTTTCAATGACCAAGAATCTGTTAGAAAACTACTTGCCAAGCTTGGAGGGGGATTCAATGATGATTATCAACCCACCTTTGATGAAGTGTTGAATCCTCAATTCACAAATTGTCCTCATCCCTCATCACAACAAATTTATGAAGAACAAGTTCATATTGGTTCTACCTCTTCTAGTTGCATGAACTCTACTAGCAACAACCTTGTACAATTTCCACAGACTAATGATCAGTACTGTGTTGAAGGGGCTTCATCAGGACTTGACATGGTGCAAGTACAAGGCAATTTAAGTGGGTTTGAGTTCTTCTACGGAGAAGATATGTTCACAGATAAGATTATAGGTACTACTGCAAATTGTAGCCAAAGTACTAATTGGGGTGAGAGTACTAGTACAGTGATTTGTCCTCCTCTTGTTGCTAATTCCAATTACAGGCAAGAGACACCAAAAGAATGCGTTTTCCAAGAGTTGAGAAGCTACACCGGGGAGCAATAG 1038 0.42 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQQARNSRSNGFVVKQESNRVSGDSSSSLVPQNGTQQQLYWPQMPVLPPSLQYTNQGPSFNDQESVRKLLAKLGGGFNDDYQPTFDEVLNPQFTNCPHPSSQQIYEEQVHIGSTSSSCMNSTSNNLVQFPQTNDQYCVEGASSGLDMVQVQGNLSGFEFFYGEDMFTDKIIGTTANCSQSTNWGESTSTVICPPLVANSNYRQETPKECVFQELRSYTGEQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0256 345 CDD SANT 71 113 IPR001005 -
Lal21g0256 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lal21g0256 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lal21g0256 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lal21g0256 345 MobiDBLite consensus disorder prediction 129 156 - -
Lal21g0256 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal21g0256 345 CDD SANT 16 62 IPR001005 -
Lal21g0256 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal21g0256 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lal21g0256 345 PANTHER OS09G0431300 PROTEIN 1 322 - -
Lal21g0256 345 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 322 - -
Lal21g0256 345 Gene3D - 7 68 - -
Lal21g0256 345 SMART sant 13 64 IPR001005 -
Lal21g0256 345 SMART sant 67 115 IPR001005 -
Lal21g0256 345 Gene3D - 69 141 - -
Lal21g0256 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal21g0256 345 MobiDBLite consensus disorder prediction 119 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0256 Lal-Chr21 1696845 1698641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0256 1 196 MYB Transcription Factor Family AT3G49690 67.677 1.65e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal21g0256 Myb_DNA-binding 9.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0256 K09422 - gmx:778079 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0256 21 1696845 1698641 Lal21g0256 21 1696845 1698641 ECH
Lal10g0756 10 15234520 15236568 Lal21g0256 21 1696845 1698641 PCT
Lal21g0256 21 1696845 1698641 Lal10g0756 10 15234520 15236568 PCT