Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0251 ATGGACTCTGATAAAGCGAAGCTGTTCGTAGGGGGCATTTCCCGAGAAACCACTGATGATATTCTGAGAAATCATTTCGCTAAATACGGAAACGTTTTAGATTCCACGATTTCAGTAGACCGCATCACTCGAAACCCTAGAGGTTTTGGCTTTGTTACATTCTCTGATCTTTCTGCAGCTGAAAAAGCTCTTCAAGATACCCATGTTATTCTTCGAAGAACGGTAGAAGTAAAAAGAGCAATACCAAGAAGTGAACAACAACACCAAAACCAAATGCAGAATCGAGGGGTGAGTAACTATTGCAGTAATGAGTGTAGTGGTGACAAGGTTAGGACGAAAAAGATATTTGTAGGAGGTTTATCTGCCGGTATATCTGAGGAAGAGTTTAGGAGATACTTTGAGAGGTTTGGTCGGATAACCGATGTAGTGGTAATGCAGGACAGTGTAACTCATCGGCCTAGGGGGTTTGGGTTCATCACTTTTGATTCAGAAAAATCAGTTGAAAATGTTGTGGTGCAAAGTTTTCATGACTTGAATGGTAGACAGGTTGAGGTGAAGAGGGCTGTACCAAAAGAGGGGAACTACGGCGGTGATGGTTTTAACAAGTCAAGATATAATAAGATTGAAAGAGGAGCCTCTCAAAATTATCCTCCTTATAGTCCAAGGTACATGTTCCCTGGCTCTGCACCTGTGCCCTATTATAGCGGTGGTGGGTTTTATGCCTATGGATCAAACCCCTATGGTTATTGCTACACTATGGGTGGGTATGGGGGAAATGGATTTGCAGTTCCATCTGATGCTTCTAGAAACTTCTGGTATGGTCCCATGTCAACCGGTCCTCAGGCGTGTCAGATGCCATATGCCTGTGCCTCTCCAAATGTTGCGTACGCGGGTGGCAGGGTTCAAATAGTAGGTAGTTGTTTTGGAACAAGGGGGTACAATGGTATTCTTGGGCCTACAACAAATTTGAAATATGATCAATGTTTTACTGCCAATGGATTTGTTCCACATTATGTGATGCCACCTCACAGCTAG 1035 0.4329 MDSDKAKLFVGGISRETTDDILRNHFAKYGNVLDSTISVDRITRNPRGFGFVTFSDLSAAEKALQDTHVILRRTVEVKRAIPRSEQQHQNQMQNRGVSNYCSNECSGDKVRTKKIFVGGLSAGISEEEFRRYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEKSVENVVVQSFHDLNGRQVEVKRAVPKEGNYGGDGFNKSRYNKIERGASQNYPPYSPRYMFPGSAPVPYYSGGGFYAYGSNPYGYCYTMGGYGGNGFAVPSDASRNFWYGPMSTGPQACQMPYACASPNVAYAGGRVQIVGSCFGTRGYNGILGPTTNLKYDQCFTANGFVPHYVMPPHS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0251 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 67 IPR000504 GO:0003723
Lal21g0251 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Lal21g0251 344 Gene3D - 110 192 IPR012677 -
Lal21g0251 344 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 329 - -
Lal21g0251 344 SUPERFAMILY RNA-binding domain, RBD 109 207 IPR035979 GO:0003676
Lal21g0251 344 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lal21g0251 344 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal21g0251 344 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 329 - -
Lal21g0251 344 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Lal21g0251 344 Gene3D - 1 109 IPR012677 -
Lal21g0251 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal21g0251 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0251 Lal-Chr21 1640029 1644798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0251 8 186 Eukaryotic Initiation Factors Gene Family AT4G34110 27.473 3.16e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0251 K14411 - gmx:100816822 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0251 21 1640029 1644798 Lal21g0251 21 1640029 1644798 ECH
Lal17g0141 17 870913 878116 Lal21g0251 21 1640029 1644798 LSH
Lal21g0251 21 1640029 1644798 Lal4g0157 4 972308 974106 LSH