Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0237 ATGAAGGATCCTACAGTAGAGATTATTGAACCTGAATATTGCCCTGAAGCAGTGATTGGTTGGTATGAATGCACAGGAGGATCACAACTTTACAAGAGTGTTGGCAATGACAAGAATAAATGTAAGAGAGAGTTATCCTCAAAAGCAAGGAAACATCTTTGTGCTTTGGGTTGGACTTTTTGGTATGCTGATAAGAAAACCAGGCATGAGATTCGTTTCAAATCACCCAATGGAAAGAGCTATAACTCTCTCAAAACTGCATGCAAAAGGTGTATAGATGATGGAGTATGCGTTTCCTTCAAAACAAGTGGTCCTGTTGAAGTTGTTGAATCCTCTTTTGAAGAAGCACACACTGATGTTACTACATTGAAGCCAGGACCTAGGGTATATAAGAAAAGTAGGGTTCAAGCTAGGAGGTGCAACAAGAGAAGGAGGAAAGGTGATTCATCAGAAAACGAATTGCCAAGAAGGTGTTACAAGAAAATAAGCGATAGTGAGTTAACAGATGATGATGAGTGGACTCCAAAGTTAAACAAAAGGATGACTCGGTGCACGAGGCTCGCACCTGATGTGTCGAAAAAGAGACCTAAGGTTTTACGATTTGGAAAAAGGGTAAGGGAAGAAAATTGTGGAGAATCCTCCTCAATGGGAAAACATAGAACAGTTATTTCTTGGTTGATTGAAAAAAGGGTAAGGAAAGAAGATGGAAGGTCATTGATGGATAGCCAAAAAGAAGCATTGGTTTCACAGAATAACGATTTTCCGAAGCAGGGGATTATTGACAATAGTTATCAAGATCAAAGTGATAACATTTGTTCTATTTGTCAGGATGATGGTGAAGTAATGCTATGTGATAACTGTCCTTCTGTATTTCATTACACTTGTCTTGGTCTTGAGAAGGTTCCTGATGGTGATTGGTTTTGTCCATCATGTTGTTGCAAACTATGCAACAGAACAAAGTGCAGAGAAGATTGTGAAGCAGATCATGTGGATAATAGTGTTCTTTGTTGTTATCAATGTGAGAGAAAACAACACATTGGGTGCTTAAAAAGTTTAGGCTTTACTAAGATGAAAGTTTGTGTTGATGAGAATTGGCTCTGCAACAATGATTGTGAGAACGTATTTTTTACTCTACAGAAACTGATAGGAAAAGCAATTCCTGTGAAGGGAAAGAATTTAACTTTGACATTTTTGAAGAAGACCATAAAAAATGATGTTCATAATTCTGATAATCAAATTGAAAGAAAACTGAGGGTAGCTCTTGGAGTAATGCATGAGTGTTTTGATCCAATGATTGATGCTTCCACAGGGAGAGATATTGTGGCAGATGTTATTTTCAGTAGAGGCTCAGAACTTAATCGCTTGAATTTTAAAGGGTTCTATACTGTGATACTGGAGAGAAATAATGAGGTGATTTCTGTTGCTACCATGAGGATTTATGGTCAGAGAGTTGCAGAAGTACCACTTGTTGCAACTAGGAGCCAGTTTAGAAGACAAGGAATGTGTAGAATTTTGATGAATGGGATTGAGAATTTGTTGAATCAGTTTGGAGTTAAGAGTTTGGTTTTACCATCTGCTCATGGTATGGTAGAAACTTGGATAGACTCATTTGGCTTTGCAAGGATGAGTTGTGCAGATAAATATCAATTAAGGGGATACACTTTTCTAGACTTTCAGGACTCCACTATGTGCCATAAACCATTGAAGAAATCTCAAATGGAACATGAGAATATGCATCTTATGTTATGGTTAGGTCAGATGTAG 1764 0.377 MKDPTVEIIEPEYCPEAVIGWYECTGGSQLYKSVGNDKNKCKRELSSKARKHLCALGWTFWYADKKTRHEIRFKSPNGKSYNSLKTACKRCIDDGVCVSFKTSGPVEVVESSFEEAHTDVTTLKPGPRVYKKSRVQARRCNKRRRKGDSSENELPRRCYKKISDSELTDDDEWTPKLNKRMTRCTRLAPDVSKKRPKVLRFGKRVREENCGESSSMGKHRTVISWLIEKRVRKEDGRSLMDSQKEALVSQNNDFPKQGIIDNSYQDQSDNICSICQDDGEVMLCDNCPSVFHYTCLGLEKVPDGDWFCPSCCCKLCNRTKCREDCEADHVDNSVLCCYQCERKQHIGCLKSLGFTKMKVCVDENWLCNNDCENVFFTLQKLIGKAIPVKGKNLTLTFLKKTIKNDVHNSDNQIERKLRVALGVMHECFDPMIDASTGRDIVADVIFSRGSELNRLNFKGFYTVILERNNEVISVATMRIYGQRVAEVPLVATRSQFRRQGMCRILMNGIENLLNQFGVKSLVLPSAHGMVETWIDSFGFARMSCADKYQLRGYTFLDFQDSTMCHKPLKKSQMEHENMHLMLWLGQM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0237 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 332 IPR013083 -
Lal21g0237 587 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 423 560 IPR000182 GO:0016407
Lal21g0237 587 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 461 562 IPR016181 -
Lal21g0237 587 SMART PHD_3 271 312 IPR001965 -
Lal21g0237 587 MobiDBLite consensus disorder prediction 134 155 - -
Lal21g0237 587 ProSiteProfiles Zinc finger PHD-type profile. 269 314 IPR019787 -
Lal21g0237 587 CDD NAT_SF 463 523 - -
Lal21g0237 587 Pfam PHD-finger 271 313 IPR019787 -
Lal21g0237 587 SUPERFAMILY FYVE/PHD zinc finger 263 321 IPR011011 -
Lal21g0237 587 Gene3D - 440 558 - -
Lal21g0237 587 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 234 571 - -
Lal21g0237 587 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 7 231 - -
Lal21g0237 587 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 234 571 - -
Lal21g0237 587 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 7 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0237 Lal-Chr21 1571695 1573659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0237 109 514 PHD Transcription Factor Family AT5G58610 36.342 1.02e-70 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal21g0237 PHD 1.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0237 - - lang:109342624 992.645