Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0233 ATGGATACTATTGAAGCTTTCTCTGATGGAGAATGGGACTGCTTTTCCAGCATGTTGTTTGCCATTGAAGAGCATGATCAGTTACCACAATTTCTTGGTCAAAGTTCACTTCAATCTGAGGGATATGAGAGTATGTTTTATTCTTTTGATGCCCATAACTCTAATTTGCAACATATTTCTCAAGAAAGAAGTCAAAGTAGTGACCATAATGTCTTAATATCTGATCCAAGTTACACAAACTATCGTTTACGTTATCCTGATAATGTACTAGTAAATAATGCCTATACATCCCTAGGTTTTTCCATGATGGGTGAGAAAACCCATGTCTCTTTGGTTCCATTGGTTACTGATATTGTAGTAGAAGACAATGCCAGTTTGAATGGACGTGAGAAAAATGATATATCAGTGAATTTTGATCACATTCAAGAGGAACCTATTATTTTTTCAAACAAGCAGTTGCAGCTCAAAAGGAAGCCTGATATGCCAGAATTGGAGGTGCATGTGGAAGAAAAAATAGATATAAACTCATCATGGAATCAGAAGAAAAGATCTCGTGCTTCAAAAGATGTGCCAAGATGCACGAAGAATGAAAAGGTGGAGAAAAAGGAGAAGGTGGTAGAAGAGAATAATGCAGGATCAGATGGACAAAGTTGTAGTAGTTACACCTCAGAGGAGGATAATGGTTATCAGGAAAATAATGAAGGAGTAACTTCAGCATCTAAATCATGTGCCTCTCTCAACTCAAATGGGAAAACAAGAGCTAGTAGGGGATCTGCAACAGATCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAAGATAAATGAGAGACTAAGAATTCTACAGAACCTTGTTCCCAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAATCCATTACGTGAAACTTTTGCAGCTTCAGATCAAGCTTTTAAGCTCTGATGATTTGTGGATGTACGCTCCGATTGCTTATAATGGATTTGACATCGGACTTGATCTCAACAGGAAGGTTTCTCTGCCTCAATGA 1035 0.3787 MDTIEAFSDGEWDCFSSMLFAIEEHDQLPQFLGQSSLQSEGYESMFYSFDAHNSNLQHISQERSQSSDHNVLISDPSYTNYRLRYPDNVLVNNAYTSLGFSMMGEKTHVSLVPLVTDIVVEDNASLNGREKNDISVNFDHIQEEPIIFSNKQLQLKRKPDMPELEVHVEEKIDINSSWNQKKRSRASKDVPRCTKNEKVEKKEKVVEENNAGSDGQSCSSYTSEEDNGYQENNEGVTSASKSCASLNSNGKTRASRGSATDPQSLYARKRREKINERLRILQNLVPNGTKVDISTMLEEAIHYVKLLQLQIKLLSSDDLWMYAPIAYNGFDIGLDLNRKVSLPQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0233 344 MobiDBLite consensus disorder prediction 176 209 - -
Lal21g0233 344 Pfam Helix-loop-helix DNA-binding domain 268 308 IPR011598 GO:0046983
Lal21g0233 344 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 6 338 - -
Lal21g0233 344 MobiDBLite consensus disorder prediction 210 262 - -
Lal21g0233 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 324 IPR036638 GO:0046983
Lal21g0233 344 CDD bHLH_AtIND_like 259 321 - -
Lal21g0233 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Lal21g0233 344 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 338 - -
Lal21g0233 344 MobiDBLite consensus disorder prediction 176 269 - -
Lal21g0233 344 Gene3D - 260 316 IPR036638 GO:0046983
Lal21g0233 344 SMART finulus 264 313 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0233 Lal-Chr21 1546992 1549060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0233 222 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 77.586 2.42e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal21g0233 HLH 6.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0233 - - lang:109343864 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0233 21 1546992 1549060 Lal21g0233 21 1546992 1549060 ECH