Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0220 ATGGCTTTTTCAGCGAAAGAAATGGATCGGATTAAAGGTCCGTGGAGCCCCGAAGAAGACGAAGCATTACGAAGGTTAGTTCAAACTTACGGTCCTAGGAACTGGACTCTGATCAGTAAATCTATCCCTGGTCGATCTGGAAAATCGTGCCGTTTGCGGTGGTGCAATCAGCTGTCACCGGAGGTGGAGCATCGGCCGTTTACTCCTGACGAGGACGAAGCTATAATCAAGGCACATGCTGATTTCGGGAATAAGTGGGCCACCATTGCTCGTCTCCTCAACGGTCGCACCGATAACGCTATCAAGAATCATTGGAATTCCACGCTTAAGAGAAAATACTCCACCGTGTCGGATAGCGTTGAGGATCATCCACCTCTGAAAAGATCTGTTAGTCTTGGTGCGGGTCCTACCGTTTCTAGCTTGGGTAGCCAGAGTGGATCCGATTTGAGTGAATCTAGTTTAGCCGCACCGGTTTTGAGTTTGAGGCCCCTTTTAAAGAGCGCAACTATGCATGTTGTGGAGAGTGCTTCCACCGTCGCTGATCCACTCACATCACTAACTTTATCTCTACCCGGGTCCGAACCAAATGGATTCGGGTCGAATAAGTTATCCGGGGCGGGTCCAACACAGGTTGCTGATAAGAACAGTGAAGGGCGTGAGCAAATGAGTCAGGAGAAGCAATTGTTCAGCGCAGAGTTCTTAGCTGTGATACAAGAAATGGTTAGAACGGAAGTGAGGAATTTCATGATTGAGGTTGACCATAATAATGGTCTCTCTTTGCAAACCCAAGCAATTAGAAACGCTGTGATGAAGCATATGGGAACTGGCAAGGTTGAGTGA 840 0.4798 MAFSAKEMDRIKGPWSPEEDEALRRLVQTYGPRNWTLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPDEDEAIIKAHADFGNKWATIARLLNGRTDNAIKNHWNSTLKRKYSTVSDSVEDHPPLKRSVSLGAGPTVSSLGSQSGSDLSESSLAAPVLSLRPLLKSATMHVVESASTVADPLTSLTLSLPGSEPNGFGSNKLSGAGPTQVADKNSEGREQMSQEKQLFSAEFLAVIQEMVRTEVRNFMIEVDHNNGLSLQTQAIRNAVMKHMGTGKVE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0220 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Lal21g0220 279 MobiDBLite consensus disorder prediction 116 149 - -
Lal21g0220 279 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Lal21g0220 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Lal21g0220 279 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lal21g0220 279 PANTHER MYB PROTEIN-RELATED 8 248 - -
Lal21g0220 279 CDD SANT 14 56 IPR001005 -
Lal21g0220 279 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 8 248 - -
Lal21g0220 279 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lal21g0220 279 Pfam Myb-like DNA-binding domain 15 73 - -
Lal21g0220 279 SMART sant 63 111 IPR001005 -
Lal21g0220 279 SMART sant 11 60 IPR001005 -
Lal21g0220 279 Gene3D - 11 63 - -
Lal21g0220 279 MobiDBLite consensus disorder prediction 192 213 - -
Lal21g0220 279 CDD SANT 66 109 IPR001005 -
Lal21g0220 279 Gene3D - 65 129 - -
Lal21g0220 279 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0220 Lal-Chr21 1459975 1460814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0220 9 279 MYB Transcription Factor Family AT5G67300 50.329 1.27e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal21g0220 Myb_DNA-bind_6 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0220 K09422 - pvy:116130840 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0220 21 1459975 1460814 Lal23g1314 23 14046517 14047398 ECH
Lal21g0220 21 1459975 1460814 Lal21g0220 21 1459975 1460814 ECH