Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0217 ATGGCTCATGATTTGTACTGCTCAGAAGCACATTGGGTGGAAAACATAGGTCTAGATGAATTATTAGAATACAATGAGTGTGTTAGTGATTCCACTACTAGCACAATAATAAACTCATCAAACTCAAACTACCCTCTTATGTTGTTAGAACAGGACATGTTTTGGGACGATGAAGAGTTAACATCATTATTGGCAAAAGAACAACACAATCCACTTCATACTTGCATCAAATGTGACACAGTATTGGAGGGAGCGCGTGTAGAAGCTGTGTTATGGATGCTGAAAGTGAATGCCCATTACTCATTCTCTGCTCTCACCGCCATTCTTGCTGTTAACTACCTTGACAGGTTCCTCTTCAGCTTCAGATTTGAGAATAGGAAACCATGGATGATTCAGCTTTCTGCTGTTGCGTGTCTCTCACTCGCTGCCAAGGTGGAAGAGACCCAAGTACCCCTTTTACTAGACCTCCAAGTTGAGGATAGCAAATACTTGTTTGAAGCCAAAACGATTAAAAGGATGGAAATATTGGTGCTTTCTACTCTTGGATGGAAGATGAACCCACCAACCCCTCTTTCATTTCTTCACTATATCATAAGAAGACTTGGATTTAAGAATGATTTTAATCTTTGCTTTGAGTTCCTCAAGAGATGCGAATCCCTTCTAATCTCTCTCATTCCAGATACCAGGTTTATGAGTTACTTACCTTCTGAATTGGCAACTGCTACGATCATGCATGTTATGAACAGCGTGGAGCCTAGTCTTGGAGTTGAATACATAAACCAGCTCCTTGGTATTCTTGGAACCAACAAGGAGAAGATGGATGAGTGCTGCAAGGTTATGTTAGAGGTGTGTTCAGGGTATGAACAGGGGAAGCAATGGAAGAAGCGCAAGTTTGGGTCGATTCCAAGTAGCCCAAGTGGTGTAATGGACGTGTCATTTAGTTCTGATAACTCCAATGATTCATGGGAAGTTTCTACTTCTGCTCCTGCTTCTGTTTCATCCTCACCAGAACCATTGTTCAAGAAGACTAGGACTCAAGACCAGCTTCTACTAAACTATTCTACTTCTGAATTTCTCACCATTCCTCGCTAG 1092 0.4148 MAHDLYCSEAHWVENIGLDELLEYNECVSDSTTSTIINSSNSNYPLMLLEQDMFWDDEELTSLLAKEQHNPLHTCIKCDTVLEGARVEAVLWMLKVNAHYSFSALTAILAVNYLDRFLFSFRFENRKPWMIQLSAVACLSLAAKVEETQVPLLLDLQVEDSKYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLHYIIRRLGFKNDFNLCFEFLKRCESLLISLIPDTRFMSYLPSELATATIMHVMNSVEPSLGVEYINQLLGILGTNKEKMDECCKVMLEVCSGYEQGKQWKKRKFGSIPSSPSGVMDVSFSSDNSNDSWEVSTSAPASVSSSPEPLFKKTRTQDQLLLNYSTSEFLTIPR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0217 363 Pfam Cyclin, N-terminal domain 69 186 IPR006671 -
Lal21g0217 363 PANTHER CYCLIN D3.1 PROTEIN 37 344 - -
Lal21g0217 363 SUPERFAMILY Cyclin-like 54 186 IPR036915 -
Lal21g0217 363 Gene3D - 72 186 - -
Lal21g0217 363 MobiDBLite consensus disorder prediction 309 339 - -
Lal21g0217 363 SUPERFAMILY Cyclin-like 171 306 IPR036915 -
Lal21g0217 363 PANTHER CYCLINS 37 344 IPR039361 -
Lal21g0217 363 Gene3D - 65 278 - -
Lal21g0217 363 CDD CYCLIN 86 178 IPR013763 -
Lal21g0217 363 SMART cyclin_7 91 179 IPR013763 -
Lal21g0217 363 Pfam Cyclin, C-terminal domain 188 314 IPR004367 -
Lal21g0217 363 SMART Cyclin_C_2 188 317 IPR004367 -
Lal21g0217 363 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0217 Lal-Chr21 1428124 1430020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0217 52 348 Core Cell Cycle Gene Families AT5G67260 51.827 4.33e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0217 K14505 - aprc:113874132 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0217 21 1428124 1430020 Lal15g0180 15 1255978 1258523 ECH
Lal21g0217 21 1428124 1430020 Lal15g1257 15 14175067 14177312 ECH
Lal21g0217 21 1428124 1430020 Lal23g0189 23 1672243 1674788 ECH
Lal21g0217 21 1428124 1430020 Lal13g0405 13 2535872 2538092 ECH
Lal21g0217 21 1428124 1430020 Lal12g0409 12 2906137 2908184 ECH
Lal21g0217 21 1428124 1430020 Lal24g0325 24 2308314 2310804 ECH
Lal21g0217 21 1428124 1430020 Lal21g0217 21 1428124 1430020 ECH
Lal21g0217 21 1428124 1430020 Lal4g0132 4 824655 826647 LSH