Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0208 ATGGCGCAACTTCAAGACTCTCCGAATACCGATTCTGAGAACCCGAGTGGTAACCCGATCATGACGACGTCGTTGTACGTTGGAGATCTTGATAAGAATGTCAACGATTCTCAGCTCTATGATATTTTCAACCAGATCGTTCAAGTTGTTTCTGTTCGTGTCTGTCGCGACTTGGCTACTGGTCAATCTCTTGGTTACGGTTATGTTAATTTCAGTAACCCTCAAGACGCGGCGAAAGCTTTGGATGAGCTGAATTTTACTCCGCTGAATAACAAACCGATTAGGATAATGTATTCTATTCGTGATCCCAGTGCTCGGAAGAGTAATACTGCTAACATATTTGTCAAGAATTTGGATAAGGTGATTGACCACAAAGCTTTACATGATACTTTTTCATCTTTTGGAAATATTCTTTCATGCAAGATAGCTACAGATGCTTCTGGCCAGTCTAAAGGCTATGGTTTTGTACAATTCGAGAATGAAGAATCTGCACAGAATGCAATTGATAAGTTAAACGGAAAGCTGATTAATGATAAACCGGTCCAGGTAAGTCATTTCCTGCGAAAGGAGGACAGAGAGAGTGTGTTCAGTAGCAGTAACTCAAAATTTACTAATTTGTATGTTAAAAACCTATCGGAGTTGCTGGCAGAGGCTGAGTTGAAGAAAATATTTGGCGAATATGGGACCATTACTAGTGCTATAGTGATGAGAAATGTAGATGGTAGTTCAAAGTGTTTTGGTTTTGTCAATTTTGAAAATCCAGATAATGCAGCTAAAGCTGTTGAGGCACTTAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTCGGAAAAGCTATGAGAAAGTCTGAAAGAGAGCTCGAACTAAAGGAAAGTCTCGAGAGAAGTATGAAAGAAGCTGCTGACAAATATCAGGATGCAAACTTGTATCTTAAGAACTTGGATGATAGTATTGGTGATGAAAAACTGAAGGAACTGTTCTCCGAGTTTGGCACAATAACTTCATACAAGGTTATGCGAGATCCACATGGAATTAGTAGAGGGTCTGGATTTGTTGCATTTTCTACTCCTGAAGAAGCAAATCGAGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTTTTTGTTGCCCTTGCGCAGAGAAAAGAAGAGAGAAGAGCAAAGTTACAGGCACAATTTTCGCAAATGAGGCCAGTTGCAATGGCTCCTCCTGTTGCACCTCATATGTCACTCTACCCTCCCAGGGGTCCTGCTGTTGGACCACAATTTTTGTATGGGCAACCACCTGCCATCATCCCTCAAGCTGGATTTGGTTACCAGCAACAGCTTGTTCCTGGAATGAGACCGGGTGGTGCTCCATTGCCAAACTTTTATTTTCCAATGGTTCAGCAGGGTCAACATAGCCCACACTCTGGTGGACGCCGAGGAGTGGGTCCTTTGCAACAGCCCCAGCATCCAGTTCCAATGATGCACCAGCAGATACTTCCGAGGGGTCCTGTATACCGGTACCCTTCTGGTCGCAACACTCGAGATGGTCCACGGCCAGGAGTAGCTGGAGGAATGCTTGCAGTCCCTTATGACAGTCTGCCCATCTGGGATGCCATGGGACAGCCTTTAGCCACTCAGGCCTTGGCCACAGCCCTTGCAAATGCTCCTCCAGAACAGCAAAGGACTATGCTCGGTGAAGCTCTGTACCCACTAGTAGATAAGCTGGAACCTGAGTCTGCAGCGAAGGTTACTGGTATGATTTTGGAGATGGACCAGCCTGAGGTATTACATTTGATTGAGTCACCAGATGCTCTCCAGGAAAAAGTTGCTGAGGCCATGAATGTGTTGAGGAGAAATGTTGCTCCTGAGGATCAACTTGCTTCGCTTTCTCTGAATTGA 1896 0.442 MAQLQDSPNTDSENPSGNPIMTTSLYVGDLDKNVNDSQLYDIFNQIVQVVSVRVCRDLATGQSLGYGYVNFSNPQDAAKALDELNFTPLNNKPIRIMYSIRDPSARKSNTANIFVKNLDKVIDHKALHDTFSSFGNILSCKIATDASGQSKGYGFVQFENEESAQNAIDKLNGKLINDKPVQVSHFLRKEDRESVFSSSNSKFTNLYVKNLSELLAEAELKKIFGEYGTITSAIVMRNVDGSSKCFGFVNFENPDNAAKAVEALNGKKFDDKEWYVGKAMRKSERELELKESLERSMKEAADKYQDANLYLKNLDDSIGDEKLKELFSEFGTITSYKVMRDPHGISRGSGFVAFSTPEEANRALGEMNGKMVAGKPLFVALAQRKEERRAKLQAQFSQMRPVAMAPPVAPHMSLYPPRGPAVGPQFLYGQPPAIIPQAGFGYQQQLVPGMRPGGAPLPNFYFPMVQQGQHSPHSGGRRGVGPLQQPQHPVPMMHQQILPRGPVYRYPSGRNTRDGPRPGVAGGMLAVPYDSLPIWDAMGQPLATQALATALANAPPEQQRTMLGEALYPLVDKLEPESAAKVTGMILEMDQPEVLHLIESPDALQEKVAEAMNVLRRNVAPEDQLASLSLN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0208 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Lal21g0208 631 PANTHER POLYADENYLATE-BINDING PROTEIN 13 622 - -
Lal21g0208 631 Pfam Poly-adenylate binding protein, unique domain 551 615 IPR002004 GO:0003723
Lal21g0208 631 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Lal21g0208 631 PANTHER RNA BINDING PROTEIN 13 622 - -
Lal21g0208 631 CDD RRM4_I_PABPs 307 384 - -
Lal21g0208 631 Gene3D - 540 619 - -
Lal21g0208 631 CDD RRM3_I_PABPs 203 282 - -
Lal21g0208 631 SMART rrm1_1 308 380 IPR000504 GO:0003723
Lal21g0208 631 SMART rrm1_1 205 277 IPR000504 GO:0003723
Lal21g0208 631 SMART rrm1_1 24 97 IPR000504 GO:0003723
Lal21g0208 631 SMART rrm1_1 112 184 IPR000504 GO:0003723
Lal21g0208 631 CDD RRM2_I_PABPs 111 185 IPR045305 -
Lal21g0208 631 SMART rrm2_1 308 380 IPR003954 GO:0003676
Lal21g0208 631 SMART rrm2_1 112 184 IPR003954 GO:0003676
Lal21g0208 631 SMART rrm2_1 205 277 IPR003954 GO:0003676
Lal21g0208 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 281 IPR000504 GO:0003723
Lal21g0208 631 SUPERFAMILY RNA-binding domain, RBD 204 387 IPR035979 GO:0003676
Lal21g0208 631 Gene3D - 105 196 IPR012677 -
Lal21g0208 631 MobiDBLite consensus disorder prediction 1 22 - -
Lal21g0208 631 Coils Coil 283 310 - -
Lal21g0208 631 SMART poly_2 555 618 IPR002004 GO:0003723
Lal21g0208 631 SUPERFAMILY PABC (PABP) domain 488 625 IPR036053 GO:0003723
Lal21g0208 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Lal21g0208 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Lal21g0208 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 274 IPR000504 GO:0003723
Lal21g0208 631 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Lal21g0208 631 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 24 616 IPR006515 GO:0003723
Lal21g0208 631 Gene3D - 1 104 IPR012677 -
Lal21g0208 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Lal21g0208 631 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 543 620 IPR002004 GO:0003723
Lal21g0208 631 CDD RRM1_I_PABPs 24 103 - -
Lal21g0208 631 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Lal21g0208 631 Gene3D - 305 405 IPR012677 -
Lal21g0208 631 Gene3D - 197 304 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0208 Lal-Chr21 1354812 1359325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0208 22 630 Eukaryotic Initiation Factors Gene Family AT1G49760 64.865 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0208 K13126 - gmx:100784442 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0208 21 1354812 1359325 Lal21g0208 21 1354812 1359325 ECH