Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0196 ATGGCTGCATCCATAGCACCCTCCTTCTTTTCTTCATCCATCAACACTCTCAAATGTCTCCGTTCTAAGAACTTCTCCATGTTAACATCTGTGTCACTATCTTACATAGTGGAACCTTTGTCCATTAGTACAATCTCACAAAAGTTGTGGTTGCCTAGAATTTCTGCTGCTGTTGCAGAACAAGATATGGTTGTGGCTGCTGAAGAGAAAGTGGAGGAGAATGAAATGGGAGGGGAAGCAGTGGTAGCAGAAGAAGACACTGAAAACTCTATCATCAGCACTAAGCTATATTTTGGGAATTTGCCTTATAGTGTGGATAGTGCACAACTTGCAGGGTTAATTCAGGACTATGGCAGTGCAGAACTAATTGAGGTTCTTTACGACAGGGGCACTGGAAAAAGCAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGACTGTAATGCAGTAATTGAAAATCTTGATGGAAAGGAGTTCATGGGCCGAACATTGCGGGTGAACTTCTCTGACAAACCGAAACCAAAACTACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAATTTGTCATGGTCAGCAACTTCTGAGAGTCTGATACAAGCCTTCCAAGAATATGGAAATGTGGTTGGGGCTAGGGTCTTATATGATGGCGAAACTGGAAGGTCACGAGGTTATGGCTTCATTTGTTATTCAACAAGAGCAGAAATGGAATCTGCCCTTGCATCCTTGAATGATGTGGAACTAGAAGGACGGGCAATGCGTGTAAGCTTGGCTGAAGGAAAACGTTCGCAGGATTAA 807 0.43 MAASIAPSFFSSSINTLKCLRSKNFSMLTSVSLSYIVEPLSISTISQKLWLPRISAAVAEQDMVVAAEEKVEENEMGGEAVVAEEDTENSIISTKLYFGNLPYSVDSAQLAGLIQDYGSAELIEVLYDRGTGKSRGFAFVTMSCIEDCNAVIENLDGKEFMGRTLRVNFSDKPKPKLPLYPETEHKLFVGNLSWSATSESLIQAFQEYGNVVGARVLYDGETGRSRGYGFICYSTRAEMESALASLNDVELEGRAMRVSLAEGKRSQD 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0196 268 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 131 170 - -
Lal21g0196 268 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 176 266 - -
Lal21g0196 268 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 70 133 - -
Lal21g0196 268 SUPERFAMILY RNA-binding domain, RBD 178 265 IPR035979 GO:0003676
Lal21g0196 268 PANTHER TRANSFORMER-2-RELATED 176 266 - -
Lal21g0196 268 PANTHER TRANSFORMER-2-RELATED 131 170 - -
Lal21g0196 268 PANTHER TRANSFORMER-2-RELATED 70 133 - -
Lal21g0196 268 Gene3D - 57 174 IPR012677 -
Lal21g0196 268 SMART rrm1_1 95 168 IPR000504 GO:0003723
Lal21g0196 268 SMART rrm1_1 186 259 IPR000504 GO:0003723
Lal21g0196 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723
Lal21g0196 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Lal21g0196 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Lal21g0196 268 SUPERFAMILY RNA-binding domain, RBD 88 177 IPR035979 GO:0003676
Lal21g0196 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Lal21g0196 268 Gene3D - 175 268 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0196 Lal-Chr21 1303983 1306011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0196 93 264 Eukaryotic Initiation Factors Gene Family AT3G16380 33.862 2.42e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0196 - - lang:109326572 405.601