Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0193 ATGGACCAGTTAAATTCGTCCCCCTCTCAGGATATGGACATGATAATGATGCAGTTTCCAGAATTATCTTCAGCTTATGGCCAAAACAACACTGTTGAGGTGTTTGCACCACCGTCGGAGCTTTGTGGCGGCGCTGCTAACAGCATATGCAATAATATGTCACTGGCTGATTTAATTAATAACCCTCCTATGCCTTGGTCTTCATTCACAAACTCGCCATCCACTTCAATCTCTTTCACCAATAACCCTACTCAAATGCTTCAACAACAAGAACAAACTCCAACAGCTATGTTGTACATGAGTGAGACCGCAAACCCTTATGGTACATATGGCCGCTTAAAGAAGCGGAACTCAATGACAGCGATGAGGGAAATGATATTCCGGATAGCGTCCATGCAACCAATACACATAGACCCTGAGTCAGTGAAGCCACGAAAGCGGAAGAACGTGAAGATTTCAAAGGATCCTCAGAGCGTGGCGGCACGGCACCGTAGAGAAAGGATAAGCGAGAAGATAAGGATACTTCAGAGACTCGTGCCTGGAGGAACTAAGATGGACACTGCTTCAATGTTGGATGAAGCTATTCACTACGTCAAGTTTCTTAAATCTCAGGTCCAATCACTCCAACGAGTTTCCGCAACCAGCAATACAAGGCCATTTTATGCTTCAGGGATAGGATTCCCTGTTACAATGAACCCTCTACCTAAACCTTACCCATCTGGAAATGTTGAGTATTATGGAGATTATGCATGA 753 0.4449 MDQLNSSPSQDMDMIMMQFPELSSAYGQNNTVEVFAPPSELCGGAANSICNNMSLADLINNPPMPWSSFTNSPSTSISFTNNPTQMLQQQEQTPTAMLYMSETANPYGTYGRLKKRNSMTAMREMIFRIASMQPIHIDPESVKPRKRKNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQRVSATSNTRPFYASGIGFPVTMNPLPKPYPSGNVEYYGDYA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0193 250 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 2 233 IPR045843 GO:0003700|GO:0006355
Lal21g0193 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 216 IPR036638 GO:0046983
Lal21g0193 250 Pfam Helix-loop-helix DNA-binding domain 161 201 IPR011598 GO:0046983
Lal21g0193 250 Gene3D - 150 218 IPR036638 GO:0046983
Lal21g0193 250 SMART finulus 158 207 IPR011598 GO:0046983
Lal21g0193 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Lal21g0193 250 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 2 233 - -
Lal21g0193 250 CDD bHLH_AtIND_like 153 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0193 Lal-Chr21 1273921 1275049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0193 118 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 91.304 2.53e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal21g0193 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0193 - - gmx:100815041 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0193 21 1273921 1275049 Lal21g0193 21 1273921 1275049 ECH