Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0190 ATGAAGATACTGGTTACCGGCGCTTCTGGTTACCTTGGGGGAAGACTCTGTAACTCCCTCCTCCGTCAAGGTTACTCCGTCAGGGTGCTCGTCAGGCCAACCAGCAACCTCTCCAACCTTCCTCCGTCCTCCTCCTCCGCATCTCTCGAAATCGTCTACGGCGATGTCACCGACTACGCATCTCTCTTATCTGCATTCTCCGGTTGCTCCGTCGTTTTCCACGTCGCCGCTCTCGTCGAACCCTGGCTTCCCGATCCCTCTAGATTCTTCTCAGTTAATGTTGGAGGATTGAAAAATGTGTTGGAGGCGGTGAAGGAAACAAAGACAGTGGAGAAACTGATATATACTTCATCGTTTTTCGCTCTTGGACCAACTGATGATGGAGGCGTTGCTGATGAGAATCAAGTCCACCATGAGAAATTTTTCTGCACTGAGTATGAGAAATCAAAGGTTGCTGCAGATAAGATTGCTCTTCAAGCTGCATCCGACGGATTTTCGATTGTGTTGCTTTATCCAGGAGTAATCTATGGGCCTGGCAAGGTCACAGCAGGAAACGTTGTTGCAAGAATTATAATAGAACGCTTTAATGGCCGATTACCTGGTTACATAGGCTATGGATATGATAGATTTTCATTCAGCCATGTTGATGATGTGGTGGATGGACACATTGCAGCAATGAAAAAAGGACAAACTGGGAATAGGTATTTACTAACAGGTGAAAATGCATCATTCAAGCAAGTTTTTGACATGGCTGCTGTGATCACAGATACTACAAAACCAATATTTAGCATCCCTTTGTGGATGATTGAAGCATATGGCTGGTTGTCAGTTTTATTTGCTCGAATAACTGGAAAGCTTCCCCTGATCAGTCCACCGTGGTTTTTTCCTCTCCCTGATAAAGAAACCTTGGAGAACCAAGGGATGATTTTAGAAGAAATTAAAGCATACTATTGGAAAAATAAGACTGTGAATACTATAAGGCATAGATGGGAATACTCTTGTGAGAAAGCTAAACAGGAGCTGGATTATAGTCCCAGAAACCTGAGAGATGGACTCGCGGAAGTGCAACTCTGGTTGAAGAACTTGGGTTTGATAAGATATTACTGTAACAAAACCACAATAACATTCAGAATTAATTTAGTCGCGCTTCACTTCAAAACTGCAGAGAAGAAGAAAGATAGTTTGGGTGTGAAAATGGTGGCAGCATACGAGGAGAGTCGTAGGAAAAGAATGGAAGAGAACAAGAAGAGAATGGAGGCACTGAATCTTCATCATCTTTCTCAATCCCTTCATAAGTCCACTTCTCCAAAACCCTCTCCTTCTAAACCTCGTACCCCAATCAAATATAAAGAACTCGTTGTCGTTAGGAGATCTGGTCGTGTCGCCAATCTCCCTTCTCCTATTTACAAACAAGTACTTGTTGATCGCGTCACTATACCTAGAAGAAGTTATAATAGGCACAGGGATTACTCGAACCGGGTATATGCTTCGGATGAAGATAGAGAGGAAGCTATGGAGAAAGCACTGAAGATAGAGTCGGATTTAGAATCTCAATATCCAACTTTAATTAGGTCAATGCTCCAATCACATGTCAGCGGCGGATTCTGGCTGGGTCTTCCAGTGGATTTTTGCAGGAGAAACCTCCCGAAACAGGATGAAACAATTGATTTGATAGATGAGGATGGGAATGAATATCCCACAGTTTATTTGGCTCATAAAAGAGGACTTAGTGGTGGATGGAGAGGTTTTGCAATTGCTCATGACCTAGCGGATGGGGATGCTTTAGTTTTTCAATTGATCAATCGCACTGCATTCAAGGTTTATGTTGTTAGGGTGAATGGTCTGGCCGAGGAGGGTGAACAACATGAGTAA 1872 0.4338 MKILVTGASGYLGGRLCNSLLRQGYSVRVLVRPTSNLSNLPPSSSSASLEIVYGDVTDYASLLSAFSGCSVVFHVAALVEPWLPDPSRFFSVNVGGLKNVLEAVKETKTVEKLIYTSSFFALGPTDDGGVADENQVHHEKFFCTEYEKSKVAADKIALQAASDGFSIVLLYPGVIYGPGKVTAGNVVARIIIERFNGRLPGYIGYGYDRFSFSHVDDVVDGHIAAMKKGQTGNRYLLTGENASFKQVFDMAAVITDTTKPIFSIPLWMIEAYGWLSVLFARITGKLPLISPPWFFPLPDKETLENQGMILEEIKAYYWKNKTVNTIRHRWEYSCEKAKQELDYSPRNLRDGLAEVQLWLKNLGLIRYYCNKTTITFRINLVALHFKTAEKKKDSLGVKMVAAYEESRRKRMEENKKRMEALNLHHLSQSLHKSTSPKPSPSKPRTPIKYKELVVVRRSGRVANLPSPIYKQVLVDRVTIPRRSYNRHRDYSNRVYASDEDREEAMEKALKIESDLESQYPTLIRSMLQSHVSGGFWLGLPVDFCRRNLPKQDETIDLIDEDGNEYPTVYLAHKRGLSGGWRGFAIAHDLADGDALVFQLINRTAFKVYVVRVNGLAEEGEQHE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0190 623 Gene3D - 1 366 - -
Lal21g0190 623 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 367 - -
Lal21g0190 623 Gene3D - 497 614 IPR015300 -
Lal21g0190 623 CDD AR_FR_like_1_SDR_e 3 359 - -
Lal21g0190 623 ProSiteProfiles B3 DNA-binding domain profile. 522 613 IPR003340 GO:0003677
Lal21g0190 623 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 367 - -
Lal21g0190 623 SUPERFAMILY DNA-binding pseudobarrel domain 516 613 IPR015300 -
Lal21g0190 623 MobiDBLite consensus disorder prediction 426 445 - -
Lal21g0190 623 Pfam NAD dependent epimerase/dehydratase family 3 235 IPR001509 -
Lal21g0190 623 SMART B3_2 522 613 IPR003340 GO:0003677
Lal21g0190 623 Pfam B3 DNA binding domain 525 610 IPR003340 GO:0003677
Lal21g0190 623 Coils Coil 401 421 - -
Lal21g0190 623 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 373 IPR036291 -
Lal21g0190 623 CDD B3_DNA 520 611 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0190 Lal-Chr21 1255861 1261779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0190 397 616 B3 DNA Binding Superfamily AT3G19184 51.982 6.66e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal21g0190 Epimerase 3.3e-30 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0190 K15891 - gmx:100792747 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0190 21 1255861 1261779 Lal21g0190 21 1255861 1261779 ECH
Lal17g0103 17 642190 645775 Lal21g0190 21 1255861 1261779 LSH