Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0178 ATGAATAACCCTATCAAACAATTCTCTAACTCACGGTCATCACACAGTGACGGTAGTTTGAGACAATCACTTCAGCAGCGTAGATTTACAAAGCAGAGGAAGCTCCGTTACTTGACGGACCAAGACGCCGGCGTCAATTCGACGTCATCGTTGCCGGCTTCTCCTCTTCCATCTTTCAATATTGGTTCTTGTTCCGATCACTGGTCCTCCTCTGCTGTTCCTCAACCGTTGCCTCTTCCTGAAACACCGTTGACCCACCGATCAGAGTCAACCATTCTCTATTCTGTTGGTTATTATGCTCACCTTGGATCTCATTCCTTTGAAAATAGAGCCTTTCCCTTTTTCAGAAAGTCGATGGATCGTGATACAGTCAGAAATTTTCGATCTTCAAGCAATTTGGTTAGTAAATCTTCTTCTGATGCAATGGCTGTGAATGCAAAATATGACTTGAAAGTCAAAATACCAGCTACAAGAGTCTTGGCAGGCCACAGTTCATGTAAAGATCCCAGAGAACTTTCTCATGAAAGAATTTGCAACATGAAATTGCATTCTGCTACCAAGAGTGCCCCAACTAGCATACTCTCTAGTCCTGTTACTAGTCCTCGTAGAACAAGCAATGTAGATTTATTTGACCCTTCCCTTCATTTTCATAAACATTTTAATGACATTTTGAAAGTTTCACTGGCTAAAACTGTTCCTAGTCCAGATCATTCTCCTCACCTTAGCCCTGGTAGCCACAGTATTTTCCTAAATCCTAGCACTCAAGAAGGATCTAAGCAGCATAAATTTTGCTCCAGAGTGTGTCCTGAAAATAACCATGTTGATGCTCACCCATTACCTCTTCCTCCTAAATCTTTTTCACCATCACAATCATGTACACAACAGCATCAATCAAGTATCATGCATCATAGTACTGAAAATTCACCTTCATTGAAAGGTCCCTGGCAGAAGGGAAAACTTATCGGACGAGGATCATTCGGAAGTGTTTATCATGGAACCAACCTAGAGACTGGATCCTCATGTGCTATGAAAGAGGTGGATCTGATTCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTAGAGCAGGAAATCATAATTCTTCGTCAACTAAACCACCCTAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGGGACCACTTTTACATATACATGGAGTACGTTTGTCCTGGATCAATTAACAAATTTATGCATGATCATTGCGGAGCTATGACGGAATCTATGGTTCGCAATTTTACATGGCATATTCTCTCTGGACTGGCATACTTACATAGTAAGAAGACTATCCATAGGGACATCAAAGGTCCAAACTTGCTGGTTAATGCATCAGGCACTGTCAAGCTTGCAGATTTTGGTGTGGCAAAAATTCTGACGAGGAAATCATATCAACTTTCATTGAAGGGAAGTCCTTACTGGATGGCTCCAGAGCTCATGATGGCTGCCATAAAGAAAGAATCCAGTCCAAATATTGCAATGGCTGTAGATATATGGAGCTTAGGGTGCACCATCATCGAAATGCTGACAGGAAAACCTCCGTGGAGCGAGTTTGAAGAGGCTCAAGCCATGTTCAAAGTACTGCACAAATCACCAGCTATACCTGAAACATTATCTTCAGAGGGACAAGATTTCCTTCGGCAGTGTTTCAGAAGGAATCCTGCAGATCGACCATCCGCGGCAATGCTTCTTACACACGCCTTTGTACAAAATTTGCATGACCAAGGAGGATCAGGTGAAAACTCCCATAGTCCCGAATGTTGTCCTGAAAAGGGTCGTGATATAGTGCCGTTGTCAGCCTCCATTCGCACACGGATCATTAACAAAATTCATAATTTAATAGGGTAA 1869 0.4216 MNNPIKQFSNSRSSHSDGSLRQSLQQRRFTKQRKLRYLTDQDAGVNSTSSLPASPLPSFNIGSCSDHWSSSAVPQPLPLPETPLTHRSESTILYSVGYYAHLGSHSFENRAFPFFRKSMDRDTVRNFRSSSNLVSKSSSDAMAVNAKYDLKVKIPATRVLAGHSSCKDPRELSHERICNMKLHSATKSAPTSILSSPVTSPRRTSNVDLFDPSLHFHKHFNDILKVSLAKTVPSPDHSPHLSPGSHSIFLNPSTQEGSKQHKFCSRVCPENNHVDAHPLPLPPKSFSPSQSCTQQHQSSIMHHSTENSPSLKGPWQKGKLIGRGSFGSVYHGTNLETGSSCAMKEVDLIPDDPKSADCIKQLEQEIIILRQLNHPNIVQYYGSEIVGDHFYIYMEYVCPGSINKFMHDHCGAMTESMVRNFTWHILSGLAYLHSKKTIHRDIKGPNLLVNASGTVKLADFGVAKILTRKSYQLSLKGSPYWMAPELMMAAIKKESSPNIAMAVDIWSLGCTIIEMLTGKPPWSEFEEAQAMFKVLHKSPAIPETLSSEGQDFLRQCFRRNPADRPSAAMLLTHAFVQNLHDQGGSGENSHSPECCPEKGRDIVPLSASIRTRIINKIHNLIG 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0178 622 ProSitePatterns Protein kinases ATP-binding region signature. 321 344 IPR017441 GO:0005524
Lal21g0178 622 MobiDBLite consensus disorder prediction 286 312 - -
Lal21g0178 622 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 11 590 - -
Lal21g0178 622 MobiDBLite consensus disorder prediction 238 256 - -
Lal21g0178 622 Pfam Protein kinase domain 316 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0178 622 Gene3D Transferase(Phosphotransferase) domain 1 314 594 - -
Lal21g0178 622 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 11 590 - -
Lal21g0178 622 MobiDBLite consensus disorder prediction 1 51 - -
Lal21g0178 622 SUPERFAMILY Protein kinase-like (PK-like) 295 581 IPR011009 -
Lal21g0178 622 MobiDBLite consensus disorder prediction 1 26 - -
Lal21g0178 622 MobiDBLite consensus disorder prediction 231 256 - -
Lal21g0178 622 Coils Coil 621 622 - -
Lal21g0178 622 SMART serkin_6 315 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal21g0178 622 MobiDBLite consensus disorder prediction 275 314 - -
Lal21g0178 622 ProSiteProfiles Protein kinase domain profile. 315 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0178 Lal-Chr21 1161547 1165672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0178 28 578 MAP Kinase Kinase Kinase AT5G66850 45.134 1.71e-144 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal21g0178 Pkinase 6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0178 - - lang:109343923 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0178 21 1161547 1165672 Lal21g0178 21 1161547 1165672 ECH
Lal17g0094 17 585149 589609 Lal21g0178 21 1161547 1165672 LSH