Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0172 ATGGCTATTCGTGTTACCTTCTCCTTCTCCGGCTATGTCGCAAACAACATCGTTTCCTCCGCCACCTCCCGCATATCCAAAAACCACTGCCTCCAAGAATGTTGGATCCGATCTTGCCTCTTTGGAACAAACCGCAGAAACGAACCCGATCCCTCTACCGGAGTTCGCAGTTTCCATTCTGATTTTAGAAAATCCAAATCAGATTGTTGGGTCAAAAATTCTGCCTCCGCTGCTTACACCACCCTCGCCGGAGAAATTGTCGGTGATAACTGTAAGAACCCTATCGTGTTAGGTTTGATCTCGATGATGAAGTCAACGGTGTGTGTTTCTGGGTCATCAACGGCGGCTATGGGTGTTTTGGGTATTTCTCCATTTAAATCCTCTTCAATCATACCCTTCTTTCAGGGTTCCAAGTCGATTCCTTGTAATGAAACTGAAGCTGATGAAACTGTTGGTTCCAATTTGAGTTCCAAAGATTTTGAGAGAAGTAGTTGGATTTCGCGGTTGTTGAATGTTTGTTCTGCTGATGCGAAAGCTGTGTTAACAGCTGTCACTGTTAGTGTTCTATTTAAATCTTACTTGGCTGAACCAAAGTCTATTCCTTCTGCTTCTATGAACCCAACTCTTGAAGTTGGTGATCGGATTTTAGCTGAGAAGGTTTCTTTCTTATTTAGAAAGCCAGATGTTTCAGATATTGTGATTTTTAAAGCACCTCCTGTTTTACAGGAATTTGGTTTTTCTTCATCCGATGTATTTATAAAAAGGGTTGTGGCTAAGGAAGGAGACTGTGTTGAAGTTCGTGATGGAAAACTATTGGTGAATGGTGTTGCTGAAGAAGAGGAATTCGTTTTAGAACCTCTTGAATATGTGATGGATCAAGTGGTTGTGCCAGAAGGATATGTTTTTGTGATGGGAGACAATCGTAATAACAGTTTTGATTCTCATAACTGGGGTCCACTCCCTATCGAGAACATTGTTGGTAGATCCATGTTTCGGTACTGGCCTCCATCCAAAGTATCTGACTCTGACATCCTTCTTCAGAAACCTGCATCTGGAAACAATTCTGTGGCAGTTTCTTGA 1080 0.4213 MAIRVTFSFSGYVANNIVSSATSRISKNHCLQECWIRSCLFGTNRRNEPDPSTGVRSFHSDFRKSKSDCWVKNSASAAYTTLAGEIVGDNCKNPIVLGLISMMKSTVCVSGSSTAAMGVLGISPFKSSSIIPFFQGSKSIPCNETEADETVGSNLSSKDFERSSWISRLLNVCSADAKAVLTAVTVSVLFKSYLAEPKSIPSASMNPTLEVGDRILAEKVSFLFRKPDVSDIVIFKAPPVLQEFGFSSSDVFIKRVVAKEGDCVEVRDGKLLVNGVAEEEEFVLEPLEYVMDQVVVPEGYVFVMGDNRNNSFDSHNWGPLPIENIVGRSMFRYWPPSKVSDSDILLQKPASGNNSVAVS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0172 359 TIGRFAM sigpep_I_bact: signal peptidase I 179 335 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lal21g0172 359 Pfam Signal peptidase, peptidase S26 177 334 IPR019533 GO:0004252|GO:0006465
Lal21g0172 359 PANTHER SIGNAL PEPTIDASE I 1 357 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lal21g0172 359 SUPERFAMILY LexA/Signal peptidase 192 339 IPR036286 -
Lal21g0172 359 ProSitePatterns Signal peptidases I signature 3. 301 314 IPR019758 GO:0004252|GO:0016021
Lal21g0172 359 CDD S26_SPase_I 196 328 IPR019533 GO:0004252|GO:0006465
Lal21g0172 359 ProSitePatterns Signal peptidases I serine active site. 202 209 IPR019756 GO:0004252|GO:0016021
Lal21g0172 359 Gene3D Umud Fragment, subunit A 190 346 - -
Lal21g0172 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 193 209 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lal21g0172 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 252 264 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lal21g0172 359 PRINTS Bacterial leader peptidase 1 (S26A) family signature 296 315 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lal21g0172 359 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0172 Lal-Chr21 1136348 1138848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0172 205 335 MADS-box Gene Family AT1G29960 34.848 3.29e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0172 K03100 - jre:109010298 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0172 21 1136348 1138848 Lal21g0172 21 1136348 1138848 ECH
Lal21g0172 21 1136348 1138848 Lal4g0112 4 690686 694046 LSH