Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0161 ATGATCGATCCGTTCCTTCCTGGTATCGCCTTCTCAATTGTTTTGGTTTCTTCAGGTTTGGGGGTTCTAGAGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCCCCCCCAAGCCCTTCCTACTCCAACAACAATAATAACAGCGATGCCGGCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGATCCAATAATTACTTTATGTGGTCATCTTTTCTGTTGGCCTTGTCTTTACAGATGGCTTCATTTCCACTCGAAATCACGAGAATGCCCAGTGTGCAAGGCCCTTGTCGAGGAGGAGAAGCTGGTTCCCTTGTACGGGAGAGGAAAGACATCAACTGACCCAAGATCGAAATCTATTCCGGACGCTAATATTCCTCATCGCCCGGCTGGTCAAAGACCCGAAACTGCTCCCCCACCTGAATCAAATCATTTTCGTCAGCATGGGTTTGGATTCTCTGGTGGGCTAGGAGGGTTTGCGCCAATGGCAACTGCGAGATTTGGGAATCTCACATTTTCTGCAGCATTTGGTGCCTTCCTACCATCCTTATTTAACTTTCAGTTACATGGGTTTCATGATGATGCCATGCATGGTGGAGCTGCTGGTTTTCCTTACGGATTTTCTAATTCATTTCATGGTGTCCATGCTCATAGATATCCGCTACATGCCGGCCAAGTGCAGCAAGATTTATTTCTGAAAAGGCTGTTTCTGTTTATTGTTTTCTGTGTTGTTCTTGTTTTTATTTGGCAATAA 762 0.4514 MIDPFLPGIAFSIVLVSSGLGVLEMASGFGESTSRSPPSPSYSNNNNNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYRWLHFHSKSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPDANIPHRPAGQRPETAPPPESNHFRQHGFGFSGGLGGFAPMATARFGNLTFSAAFGAFLPSLFNFQLHGFHDDAMHGGAAGFPYGFSNSFHGVHAHRYPLHAGQVQQDLFLKRLFLFIVFCVVLVFIWQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0161 253 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Lal21g0161 253 PANTHER OS12G0636000 PROTEIN 26 253 - -
Lal21g0161 253 CDD RING-HC_AtRMA_like 54 98 - -
Lal21g0161 253 MobiDBLite consensus disorder prediction 110 147 - -
Lal21g0161 253 Pfam Zinc finger, C3HC4 type (RING finger) 56 96 IPR018957 GO:0046872
Lal21g0161 253 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
Lal21g0161 253 SUPERFAMILY RING/U-box 53 109 - -
Lal21g0161 253 SMART ring_2 56 96 IPR001841 -
Lal21g0161 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 26 253 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal21g0161 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0161 Lal-Chr21 1089148 1090699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0161 44 252 C3H Transcription Factor Family AT2G23780 59.813 3.00e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0161 K10666 - gmx:100527488 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0161 21 1089148 1090699 Lal21g0161 21 1089148 1090699 ECH