Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0155 ATGGCAGAAACCAATAATCCTTCACCTTCAGGAGAAGCTACCTTAGAAAACGCGTCTCAACCACCGCCTAGGAAGAAGCGTAACCTTCCCGGAATGCCTGATCCAGATGCTGAGGTAATTGCTTTGTCGCCAACGACACTAATGGCGACGAACCGTTTCGTGTGCGAGATCTGCAAGAAAGGGTTCCAACGGGACCAGAACTTGCAGCTTCACCGGCGAGGTCACAATTTACCGTGGAAGTTACGGCAGCGTTCGGTGAATGATATTAGGAAGAAAGTATACGTGTGTCCAGAACCTTCGTGCGTGCACCACCACGCGTCGAGGGCGCTTGGTGACCTCACCGGAATAAAGAAGCACTTCAGTAGAAAACACGGTGAGAAGAAATGGAAATGTGAACGTTGTTCCAAGCAATACGCCGTACAATCCGATTGGAAAGCTCATATGAAGAGTTGTGGAAGTAGAGAGTATAGATGCGATTGCGGCACCTTCTTCTCTAGGAGGGATAGCTTCTTAACACACAGAGCTTTTTGCGATGCATTAGCGGAAGAGGCGAGAGCACAAACCCTAACCGTCGCATCTCCTTCACCGCCGCCGCCACCGCTTACTCCTTCCACCTCTGTGATCTCTCCAACTTTGTCAATTCAGAGCTCAGAAATTCCAGAAAACCCAATGAGGATGTCGCCGCCGCCGCCACCGCCGCCTTGGGAGGCTGTGACGACCGTCAACACTAAGAGTGTGATGGCATCTTCAACCATATCAGCTCCATCCTCATTCTCCAATCTCATGTCAAGCATCTCAAGTACCATAGAACCCACATCCCTCACTCTCTCAACATCATCACTCTTTGATTCACCATCACTATTCCAAGATCCACACTACATCACTGCAACCACTGCATCTCCACAACCACCTGCATTATCTGCCACTGCATTACTCCAAAAGGCAGCACAAATGGGTGCAGCTTTATCAAATGCATCCTTTTTTCATGGATTAGGCTTACCAACATCATCTACCTCTGCGCAAGTTCACACTCACGCCCCAACAATGACATGGAATACCTTCATCCATTTAAAGCAAGATAACCTGGGGCTTGGACTTGACTCTGGTAATAATAATAATAATAATAATAATGCAGGTTTTGCAGATGTGATGATGGGTTCATCTGACCCATTTGGTGGTTCTGTTCAACCCATCATGACTCGTGATCTTCTTGGTCTAAGCATTGGTAGTGGGGTGAGTAGTCTTCCTTCTTTTTTCACCTCTTTTGGAGGGAACTTCCAAACATCAGAGGAGGGAGGAGGTGGAGTTGGCCACTAG 1317 0.4799 MAETNNPSPSGEATLENASQPPPRKKRNLPGMPDPDAEVIALSPTTLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRSVNDIRKKVYVCPEPSCVHHHASRALGDLTGIKKHFSRKHGEKKWKCERCSKQYAVQSDWKAHMKSCGSREYRCDCGTFFSRRDSFLTHRAFCDALAEEARAQTLTVASPSPPPPPLTPSTSVISPTLSIQSSEIPENPMRMSPPPPPPPWEAVTTVNTKSVMASSTISAPSSFSNLMSSISSTIEPTSLTLSTSSLFDSPSLFQDPHYITATTASPQPPALSATALLQKAAQMGAALSNASFFHGLGLPTSSTSAQVHTHAPTMTWNTFIHLKQDNLGLGLDSGNNNNNNNNAGFADVMMGSSDPFGGSVQPIMTRDLLGLSIGSGVSSLPSFFTSFGGNFQTSEEGGGGVGH 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0155 438 SUPERFAMILY beta-beta-alpha zinc fingers 52 149 IPR036236 -
Lal21g0155 438 MobiDBLite consensus disorder prediction 1 36 - -
Lal21g0155 438 SMART c2h2final6 129 149 IPR013087 -
Lal21g0155 438 SMART c2h2final6 94 124 IPR013087 -
Lal21g0155 438 SMART c2h2final6 53 75 IPR013087 -
Lal21g0155 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Lal21g0155 438 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 9 426 - -
Lal21g0155 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 426 - -
Lal21g0155 438 MobiDBLite consensus disorder prediction 1 17 - -
Lal21g0155 438 Gene3D Classic Zinc Finger 49 76 - -
Lal21g0155 438 Gene3D Classic Zinc Finger 88 177 - -
Lal21g0155 438 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lal21g0155 438 Pfam Zinc-finger of C2H2 type 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0155 Lal-Chr21 1055046 1060063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0155 5 417 IDZ Gene Family AT3G50700 51.461 1.12e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal21g0155 zf-met 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0155 K25869 - lang:109339499 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0155 21 1055046 1060063 Lal21g0155 21 1055046 1060063 ECH