Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0140 ATGTCTAACTCCATTACCCATCAAAACCAATATGAGAACCCAGGGTTAAATGCTTATGACTCTTCTTTAAGAAACAATAGTGCATATCCTGAGGACTTAGGAGTATTTCCAAGCAGCTTCCAATCCATTGGAGATAGAATGTCACTAGCTGAAGGGTTAGAAATGAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCTAATGATAGGAGTCACCAAACTCAAGGCTTATCCCTTTCTTTAAGCTCTCACATGCTTATCCCTTCTGATGAGTACAGGCATAGACCCTTAAATCAGGGTCTCATGAACCCCAATTACTTCATGCATGGACAGGAAACAAGGGAACCTTGTAATCCTGCAGTGGAGCAGCATCTAAATAGTGAATATTTTTTCACCAGTGGTGCCACTTTTGCTTCATCTTCCACCTCATTAAACCTTTCTCCTTCAACCTCTTATGGAACTGAGTCCTTTGCTGCTGTCATTGGGAACTCAAGGTACCTGAAGCCAGCACAATCCCTTCTTGAAGATATTATTGGTGTTGGTGCAAATGTGGTTGACAGAATGAATGAAAAGTATGTGGAGAAGTTGTTTCATGGCAGTAGAACAGGTGCAAGAACACTTTCCTCAGAGCTAAAAGCAGAATTAAGGAACATGGGACCTTTATTAGCTGAAAAACAAGAACATCAAATGAAAATTGAAAAGTTGATTGCTTTGTTGGATGAGGTAGAGAGCAGATATGAGAAATACTACCATCAAATAGAAGAAGTGGTATCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCTAAGTGTTACACTGTTTTGGCACTTCAAGCCATGTCAAGGCATTTTTGCAGCTTGAGAGATGCAATAGTGTCACAAATAAATGTCGAGAAGAGAAAACTCTTTCAAGATTTACCTAAAATCAATAGTGAATTATCTCAGCTAACTCTATTTGATAGAGACAATAGACAGAGTAGAATGTCACTCCAACAACTTGGGATTATCCAAAGCCAACGCCAAGTATGGAGACCCATCAGAGGGTTGCCTGAAACTTCTGTAACAATTCTTCGTTCCTGGCTTTTTGAGCACTTTCTTCACCCTTATCCTAATGATTCTGAGAAGTTAATGCTAGCTTCTCAAACAGGTTTAACTAAAAACCAAGTATCAAATTGGTTTATAAATGCTCGGGTAAGGTTATGGAAACCAATGATAGAAGACATGTACAAAGAAGAGTTTGGAGAATCTTCAGAAGATTCTAACCCACCAGCTAACAACTATTTAACAAGGGAAGACACCACATACTGTGTTCAGGATTGA 1323 0.3938 MSNSITHQNQYENPGLNAYDSSLRNNSAYPEDLGVFPSSFQSIGDRMSLAEGLEMSHTRHLMDLLGAANDRSHQTQGLSLSLSSHMLIPSDEYRHRPLNQGLMNPNYFMHGQETREPCNPAVEQHLNSEYFFTSGATFASSSTSLNLSPSTSYGTESFAAVIGNSRYLKPAQSLLEDIIGVGANVVDRMNEKYVEKLFHGSRTGARTLSSELKAELRNMGPLLAEKQEHQMKIEKLIALLDEVESRYEKYYHQIEEVVSSFEMIAGLGAAKCYTVLALQAMSRHFCSLRDAIVSQINVEKRKLFQDLPKINSELSQLTLFDRDNRQSRMSLQQLGIIQSQRQVWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEDMYKEEFGESSEDSNPPANNYLTREDTTYCVQD 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0140 440 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 422 - -
Lal21g0140 440 Gene3D - 338 419 - -
Lal21g0140 440 MobiDBLite consensus disorder prediction 413 434 - -
Lal21g0140 440 MobiDBLite consensus disorder prediction 419 434 - -
Lal21g0140 440 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Lal21g0140 440 MobiDBLite consensus disorder prediction 1 23 - -
Lal21g0140 440 Coils Coil 226 253 - -
Lal21g0140 440 SMART prehox3 156 294 IPR006563 -
Lal21g0140 440 SMART HOX_1 344 408 IPR001356 GO:0003677
Lal21g0140 440 ProSiteProfiles 'Homeobox' domain profile. 363 404 IPR001356 GO:0003677
Lal21g0140 440 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 27 422 - -
Lal21g0140 440 SUPERFAMILY Homeodomain-like 350 411 IPR009057 -
Lal21g0140 440 CDD homeodomain 344 405 IPR001356 GO:0003677
Lal21g0140 440 Pfam Associated with HOX 161 293 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0140 Lal-Chr21 971859 975256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0140 73 419 Homeobox Transcription Factor Family AT1G19700 41.979 1.37e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal21g0140 POX 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0140 - - gmx:100792161 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0140 21 971859 975256 Lal21g0140 21 971859 975256 ECH
Lal17g0073 17 448482 457513 Lal21g0140 21 971859 975256 LSH
Lal21g0140 21 971859 975256 Lal4g0089 4 541388 545016 LSH
Lal21g0140 21 971859 975256 Lal25g0542 25 3957838 3963436 PCT
Lal21g0140 21 971859 975256 Lal10g0864 10 16157930 16162433 PCT