Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0128 ATGGCTCGAGGTAAGATCCAGATCAAGAGAATAGAGAACACAACGAACCGCCAGGTAACTTATTCAAAACGAAGAAATGGGCTATTCAAGAAGGCCAACGAACTCACTGTGCTGTGTGATGCAAAGGTTTCTATTATTATGTTCTCTAGTACTGGCAAACTCCACGAGTACATTAGCCCCTCAAACTCAACAAAACAGTTCTTTGATCAGTACCAGATGACTGTTGGAACTGATCTGTGGAGCTCCCACTATGAGAATATGCAAGAGAATTTGAAGGACCTGAAAGAGGTGAATAGGAATCTTCGCAAGGAGATTAGACAAAGGGTGGGGGAGTGTCTAGAAGATCTGAGCATTGAAGAACTAACGCTGCTTGAGGATGATATGGACAAGGCTGCTAAGGTTGTCCGCGAGCGTAAGTATAAGGTGATAACAAATCAAATTGATACCCAAAGGAAGAAGATGAATAACGAGAAAGAAGTGCAAAATAGGCTCTTACGTGACTTAGATGCAAGAGCAGAAGATCCACGTTATGGATTAGTGGAAAATGGAGGGGACTATGATTCAGTAATTGGGTTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCCTACAACCTAGCCATCCTAATCCTCATACCGGACCAGGGTCTGATCTTACCACTTACCCCTTACTATTTTAG 681 0.4273 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSNSTKQFFDQYQMTVGTDLWSSHYENMQENLKDLKEVNRNLRKEIRQRVGECLEDLSIEELTLLEDDMDKAAKVVRERKYKVITNQIDTQRKKMNNEKEVQNRLLRDLDARAEDPRYGLVENGGDYDSVIGFSNLGPRMFALSLQPSHPNPHTGPGSDLTTYPLLF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0128 226 PANTHER APETALA3 1 223 - -
Lal21g0128 226 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal21g0128 226 Coils Coil 84 111 - -
Lal21g0128 226 Coils Coil 151 171 - -
Lal21g0128 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Lal21g0128 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal21g0128 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal21g0128 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal21g0128 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal21g0128 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal21g0128 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal21g0128 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal21g0128 226 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lal21g0128 226 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lal21g0128 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal21g0128 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0128 Lal-Chr21 885945 889538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0128 1 225 MADS-box Gene Family AT3G54340 58.874 6.92e-97 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal21g0128 K-box 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0128 K09264 - gmx:547720 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0128 21 885945 889538 Lal21g0128 21 885945 889538 ECH
Lal21g0128 21 885945 889538 Lal4g0083 4 502363 504637 LSH