Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0106 ATGCTTGATTCAGTTCTGTTAGCACTTTTTCTACCATGCCTTGGCATGAGCTTTATTTTCATAATCTACATGTGCCTTCTCTGGTACGCCACTACTTACCGAAGTGATAATACCAGGCTACCGGTGAAGCAGGTATCTGAAAAGGGTTTATCCGCTTCAGAGCTCGAGAACCTTCCGAGAATCACCGGAAAAGAATTGGTCATGGGCACAGAATGCGCCGTGTGTCTTGATGAGATAGAGAACGAGCAACCGGTTCGACTGGTTCCTGCCTGTAACCACGGCTTCCACGTGGAATGTGCTGACACTTGGCTTTCTAACCATCCTTTCTGTCCGGTTTGTAGAGCCAAACTTGACCCTCAACTTTTCAATAATCCATGCTAG 381 0.4672 MLDSVLLALFLPCLGMSFIFIIYMCLLWYATTYRSDNTRLPVKQVSEKGLSASELENLPRITGKELVMGTECAVCLDEIENEQPVRLVPACNHGFHVECADTWLSNHPFCPVCRAKLDPQLFNNPC 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0106 126 SMART ring_2 72 113 IPR001841 -
Lal21g0106 126 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 124 - -
Lal21g0106 126 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Lal21g0106 126 Pfam Ring finger domain 71 114 IPR001841 -
Lal21g0106 126 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 124 - -
Lal21g0106 126 SUPERFAMILY RING/U-box 71 121 - -
Lal21g0106 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0106 Lal-Chr21 728187 728567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0106 1 121 C3H Transcription Factor Family AT5G42200 57.143 5.02e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0106 K19037 - gmx:100811160 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0106 21 728187 728567 Lal21g0106 21 728187 728567 ECH