Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0083 ATGGATTTCGCCATTGATATGTTCAAGCAAACCAAAAAAACCAAAGGGCGTAAGAAGATTGAGATCAAGAAGCTTGACAAGAATTCCAACAAGCAAGTCACATTCTCAAAACGACGAGCAGGACTGTTTAAAAAAGGTAGTGAACTCTGCGTTTTATGCAATGTTGATGCAACTATCATTGTGTTTTCTCCTGCGGACAAGTTATTTTGTTTTGGTCAACCTGATGTGGAAACCCTAGTCACTCGTTATCTTAGAAGAACAACAGAGTTGGATCCTAAAACCGAAAGAAATGAAACAGTGTCCTATGAAGAGCATAATAAGGAATATGAAGAAGCAATAAAAAAGTTGGAGTTGGAGAAGAAAGAATTGGCAAATTCTGCAAAGGAATGGAAAAAAGGGAATTGGTGGAATGAGCCAATCAATGAGATGAGTGTTGAGGAGTTGGAACAATATATGGTGGCAGTTTATGAGTTAAGAAGGAAACTAGATGAAAGGAGAGGTGAGATAATGATGGCAATGTTATAG 525 0.3771 MDFAIDMFKQTKKTKGRKKIEIKKLDKNSNKQVTFSKRRAGLFKKGSELCVLCNVDATIIVFSPADKLFCFGQPDVETLVTRYLRRTTELDPKTERNETVSYEEHNKEYEEAIKKLELEKKELANSAKEWKKGNWWNEPINEMSVEELEQYMVAVYELRRKLDERRGEIMMAML 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0083 174 PANTHER MADS BOX PROTEIN 12 172 - -
Lal21g0083 174 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Lal21g0083 174 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Lal21g0083 174 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Lal21g0083 174 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Lal21g0083 174 SUPERFAMILY SRF-like 16 88 IPR036879 GO:0003677|GO:0046983
Lal21g0083 174 Gene3D - 27 117 IPR036879 GO:0003677|GO:0046983
Lal21g0083 174 Coils Coil 99 133 - -
Lal21g0083 174 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 12 172 - -
Lal21g0083 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 71 IPR002100 GO:0003677|GO:0046983
Lal21g0083 174 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0083 Lal-Chr21 577804 578328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0083 11 151 Type I MADS-box Gene Family AT5G60440 41.558 2.60e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal21g0083 SRF-TF 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0083 - - cam:101502875 193.741