Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0079 ATGGGGGATGATGCTGTGTCAGCATTTGGTACTACCATTTTGGATGATGGAACAACCTCAATGAATTTTGATTACATGAATGAACTTTTCTTTGATGAATGTTGGTTGGAAGCCACTGCTGAGGAATCTGATTTTCCACTCTTTGACTCTTCATCATTCTTATGGAATGGTTTGGAAAATGAACATGAATCACAAGAAGCACTTTTTAGTACACAAAACAACATATTTAATGTTGATGTTTGTTCCAATAAGCAATATCAATCTGAAATTCAATCACTTGAAGGTACTTCTGAAGGGGTTACAAGGTGGTGGATTGCTCCAACACCTAATAATCCAGGACCAGATTATTCTATAATGGAAAAGTTAATGAAGGGACTCAAGTGTATCCAAGATTTGAATAGGAACAAAGATATGCTTATACAAATTTGGTTGCCAGTTAATAAAGGGGGTAAGCAGATTCTTACAACTAATGATCATCAATTCTGCCTTGGAACCAGGGCTACAAACCTTGCAAAGTACCGAGAAATCTCGATGAGATATCATTTTTCGACCGAGGAGGATGGTTCAAAGGGGTTGGTGCCAGGATTGCCTGGTAGAGTATTTAAGGAAAGGGTTCCTGAGTGGACTCCTGATGTTAGACTCTTTAGGATTGATGAGTATCCTAGAGTTGACCATGCTCAAGAGTATGAAGTACGCGGAACATTAGCACTTCCAATTTTTGAGCAAGGGAGTAGGACTTGCTTCGGTGTTATTGAGGTTGTAATGACTACCTCGCAGCTCAATTATCGCCCTGAACTTGATAGTGTTTGCAAAGCGCTCGAGGCTGTTGATCTTAGAAGCTCAAAACTTTCAAGCATTCAGGATTTTAAGACATGCCACAAGTCTTATGAGGATGTTTTACCCGAGATTCAAGAGGTATTTAGATCAGCATGTGAATTGCACAAATTACCTTTAGCTCAAACTTGGATCCCATGCATTCAACAAGGAAAAGAGGGGTGTCGGCACTCGGAAGATAATTACTTACACTGCATATCTCCTGTGGAGCATGTTTGCTATGTTAATGATCCCTCTATCCACGCTTTCCATGATGCTTGCTCCGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGAGGTGCTTATATGACAAACCAACCATGCTTCTCAAGTGACATTACCTCCTTAAGCAAGACAGACTATCCACTATCTCATCATGCGAGAATGTTCGGATTACAGGGTGCAGTTGCCATACGCCTCCGAAGCATCCATAATAGTATAGATGACTTTGTTCTAGAGTTCTTCTTTCCTGTGAATTGCATTGACAGTGAAGAGCATAAAAAGATGCTTACTTCATTGTCCATGATTATTCAAAGGGTTTGTCGTAGCTTGAGGGTTATAACCGATAAGGAATTGGAGAGTGAAACTAACTTATTAGTTGATGAAGTGATAGCCCTTGCAGATACGAGATCTCGTAGGACTGCGATTTGTAAGGAAGTTCTACAGGATGGGATGGTTGCTTCATTGGATACTGAAGAAAAATCAAAGGGTGGCAAATTCTATGACCTAAGGCAGCAACAAGATTTGAAAGGAAACCTTGACTGTGTTGGGGCGTGTTCTACTTTTGGTGAAGGTAACTTATCAAGTGCGGGAATAAGTAAAACCGGGGAGAAAAAACGGAACAAAACAGATAAAACTATCACTCTGCAAGTTCTTCAGCAATATTTCGCTGGAAGCCTAAAAGATGCTGCGAAGAACATTGGTGTTTGTACTACAACTTTGAAAAGGATCTGCAGGCGACATGGGATAATGCGTTGGCCTTCTCGAAAGATAAAGAAAGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATAGACTCAGTTCAAGGTGCCTCTGGTGCATGTCAAATAGATTCCTTCTATTCAAACTTCCTGGACCTACTTTCTCCAAATTTATCGGGAACAGACATATTATCGACCTTGAAGCAAAGTGATAATCCAAACTCATTAAGCCCAGAAGATGTCTTAAAATCACCCTGTTCGTCATGCAGTCAGAGTTCCATTTCAAGCCATCCTTGTTCCAGCATGTCAGAGCAACAATACCACACAAGTAATGTTGTTGAAGGTAACAAAGATTCTGTAGTTGTTGAAGATTCTGCTAATATTGCTTTGAAGAGGATCAGAAATGAAGCAGAGCTTAAAAGGCTAGTGAGTGAAGATAATAGAGAAAAGCTGTTGCCAATACCACTTAGCCAAGAAACACTTGGTGAACAACACTACCCTAAAACCCATGGAAATGCAACTAAAAGGGGGGATTCTCATAGAGTAAAAGTGACATATGGAGATGAGAAAAGCCGGTTTAGAATGCCGAAGACTTGGAGTTATGAAAATCTTTTGCAGGAAATTGGTATGAGATTTAACATAAGTAACATGAGCAAATTTGATGTCAAGTATTTGGATGATGACTGTGAGTGGGTTTTACTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTATCAATCTTCTGTGAACAGCACCATTAAACTTGCTCTGCAAGTTTCTAATCTTGCTCTCAGAAGTTCATTAGAGTTTACATAG 2601 0.3987 MGDDAVSAFGTTILDDGTTSMNFDYMNELFFDECWLEATAEESDFPLFDSSSFLWNGLENEHESQEALFSTQNNIFNVDVCSNKQYQSEIQSLEGTSEGVTRWWIAPTPNNPGPDYSIMEKLMKGLKCIQDLNRNKDMLIQIWLPVNKGGKQILTTNDHQFCLGTRATNLAKYREISMRYHFSTEEDGSKGLVPGLPGRVFKERVPEWTPDVRLFRIDEYPRVDHAQEYEVRGTLALPIFEQGSRTCFGVIEVVMTTSQLNYRPELDSVCKALEAVDLRSSKLSSIQDFKTCHKSYEDVLPEIQEVFRSACELHKLPLAQTWIPCIQQGKEGCRHSEDNYLHCISPVEHVCYVNDPSIHAFHDACSEHHLLKGQGVAGGAYMTNQPCFSSDITSLSKTDYPLSHHARMFGLQGAVAIRLRSIHNSIDDFVLEFFFPVNCIDSEEHKKMLTSLSMIIQRVCRSLRVITDKELESETNLLVDEVIALADTRSRRTAICKEVLQDGMVASLDTEEKSKGGKFYDLRQQQDLKGNLDCVGACSTFGEGNLSSAGISKTGEKKRNKTDKTITLQVLQQYFAGSLKDAAKNIGVCTTTLKRICRRHGIMRWPSRKIKKVGHSLQKLQLVIDSVQGASGACQIDSFYSNFLDLLSPNLSGTDILSTLKQSDNPNSLSPEDVLKSPCSSCSQSSISSHPCSSMSEQQYHTSNVVEGNKDSVVVEDSANIALKRIRNEAELKRLVSEDNREKLLPIPLSQETLGEQHYPKTHGNATKRGDSHRVKVTYGDEKSRFRMPKTWSYENLLQEIGMRFNISNMSKFDVKYLDDDCEWVLLTCDADLEECIDVYQSSVNSTIKLALQVSNLALRSSLEFT 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0079 866 Pfam RWP-RK domain 565 613 IPR003035 -
Lal21g0079 866 SUPERFAMILY CAD & PB1 domains 768 853 - -
Lal21g0079 866 ProSiteProfiles RWP-RK domain profile. 552 633 IPR003035 -
Lal21g0079 866 Gene3D - 769 854 - -
Lal21g0079 866 SMART PB1_new 772 855 IPR000270 GO:0005515
Lal21g0079 866 Pfam PB1 domain 773 854 IPR000270 GO:0005515
Lal21g0079 866 CDD PB1_NLP 773 853 IPR034891 -
Lal21g0079 866 PANTHER PROTEIN NLP8 51 862 IPR045012 GO:0003700
Lal21g0079 866 ProSiteProfiles PB1 domain profile. 772 855 IPR000270 GO:0005515
Lal21g0079 866 PANTHER PROTEIN NLP4 51 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0079 Lal-Chr21 558009 566013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0079 21 856 NLP Transcription Factor Family AT1G20640 46.791 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal21g0079 PB1 1.9e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0079 - - lang:109328153 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0079 21 558009 566013 Lal21g0079 21 558009 566013 ECH