Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0075 ATGAAAGGTGGAAAGTCAAAGACCGAGTCCAACAGAGCTGATCCTAAACTTGCTGTGAATAAGAAGGGCGGCGCCACCACTAAAGGTGGTCGGAAACCAGCCAAGGCAAAAGCGGCAAAGGACCCTAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAACAGTTCAAGAAGGAAAATCCTGACAATAAAGCAGTGTCCGCTGTTGGCAAAGCTGCTGGAGCAAAGTGGAAGACCATGTCTGACGCTGATAAAGCACCGTATGTTGCAAAAGCCGGGAAACGAAAGCAAGACTATGAGAAGAGCATGAAAACCTATAACAAGAAGCAGGAAGAAGGCCCTACGGTTGCTGAAGAAGAATCTGAGAAGTCATTATCTGAGGTGGAGGATGATGATGAGGATGATGAGGATGACGATGAGGATGATGATGAATAG 456 0.4693 MKGGKSKTESNRADPKLAVNKKGGATTKGGRKPAKAKAAKDPNKPKRPPSAFFVFMEEFRKQFKKENPDNKAVSAVGKAAGAKWKTMSDADKAPYVAKAGKRKQDYEKSMKTYNKKQEEGPTVAEEESEKSLSEVEDDDEDDEDDDEDDDE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0075 151 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Lal21g0075 151 Gene3D High mobility group box domain 29 129 IPR036910 -
Lal21g0075 151 MobiDBLite consensus disorder prediction 1 16 - -
Lal21g0075 151 Coils Coil 96 116 - -
Lal21g0075 151 MobiDBLite consensus disorder prediction 1 50 - -
Lal21g0075 151 SMART hmgende2 44 115 IPR009071 -
Lal21g0075 151 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Lal21g0075 151 MobiDBLite consensus disorder prediction 95 129 - -
Lal21g0075 151 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 148 - -
Lal21g0075 151 MobiDBLite consensus disorder prediction 130 151 - -
Lal21g0075 151 CDD HMGB-UBF_HMG-box 45 111 - -
Lal21g0075 151 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Lal21g0075 151 MobiDBLite consensus disorder prediction 78 151 - -
Lal21g0075 151 SUPERFAMILY HMG-box 37 118 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0075 Lal-Chr21 523558 525910 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal21g0075 HMG_box 4.4e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0075 K25507 - gmx:547975 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0075 21 523558 525910 Lal21g0075 21 523558 525910 ECH