Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0071 ATGATGGCTTCAAGTTGGGATGGAAGTGGAAGCCAGTCGGATGATAACCTTCTTTTTGATAGATTACATATTGAGCCTATGTATGATGCTTTTGTATGTCCTCTCACCAAGCAAGTTATGTCTGATCCTGTAACCTTAGAGAATGGACAGACTTTTGAACGTCAAGCAATCGAGAAATGGTTCAGGGAATGCAGGGAGAGTGGACGCAAACTAGTTTGTCCTTTGACTCTGCAGGAACTAAAAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTCAAGAGTGGACTTCCAGGAATGAAGCTGCACAGCTCGATATGGCTCGCCGCTCATTGAATTCGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTTCAATATATCTGCAAAAGAAGTCGGTCAAATAAGCATACCGTCCGCCAAGCAGGGCTTATACCCATGATTGTGGACATGCTGAAGAATAACAGCCGTAAGATTCGTTGTAGAGCTTTGGAAACACTTAGAATTGTGGCAGAGGAAGATGATGAGAATAAGGAAATGCTGGCGGAAGGCGATACTGTGCGTACAATAGTAAAATTTCTTAATAATGAGCTTCCAAAAGAGAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCTAAATCTGAAACCATATGTGAGAAGATTGGTTCAATAAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAATTCTGAAGATCTTTCCACTGTTGAAAAGGCTGATAAAACATTAGAGAATCTGGAGAAGTTTGAGAATAATGTGAAGCAGATGGCTGAAAATGGCAGATTGCAGCCTCTTCTGACCCAACTTCTTGAAGGTCCACCAGAAACCAAACTAGACATGGCTGGATACCTTGGTGAGCTGGTTTTGAACAATGATGTTAAAGTCTTGGTTGCTAGAACTGTGGGTTCATCACTGATCAATATAATGAAAAGTGGTAATATGAAGTCAAGAGAAGCTGCACTGAAGGCATTAAATCAGATATCATGTGAGCCAAGCGCAAAGTTTTTAATAGAGGCTGGAATTCTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCACACGATTAAAAGAGGTTTCTGCTACAATTCTCGCCAGTGTCGTGAACTCAGGGGAAGACTTCGATTCCATTCCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGACATAGTTCATAACCTACTCCATCTTATAAGCAACACTGGTCCAGCAATTGAATGCCAACTTCTCCAAGTTCTTGTTGGGCTTACTAATTCTCAAACTACGGTTGTGAGTGTTGTTGCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCCTCAATAAAACTTCTTAAAAATCTGTCACCCCACATGGGTCAGGAACTAGCTGATGCATTACGTGGCTCAGTTGGACAGCTTGGTAGTCTAATTAGAGTCATATCAGAAAATACAGGAATCACTGAAGAGCAAGCAGCAGCTGTTGGCCTTCTAGCCGATCTACCCGAGAGGGATTTGGGCCTCACGAGACAGCTCCTAGATGATGGTGCTTTTCAGATGGTCATATCTAGGGTGATTGCCATTAGGAAGGGAGAGATCAGAGGCAGTCGCTTCACGACGCCCTTTCTTGAAGGGCTGGTGAGGATTCTTGCAAGGGTTACATATGTCTTGGGTGATGAGCCTGATGCCCTTGCACTCTGCCGTGATCACAATCTTGCTGCACTGTTTATCGAGTTGCTTCAGACCAATGGACTTGATAATGTACAGATGATTTCTGCTACAGCTTTGGAGAATTTATCTCTACAATCACAGAATCTAACAAAACTACCCGAGTTGCCATCGCCAGGTGCTTGCGCTTCAATCTTTACATGCTTTGGCAAACAGCAGGTGATAACTGGAATGTGTAGGATCCACCGAGGGGTGTGTTCTTTAAAAGAAACATTTTGTCTTTTAGAAGGGCAGACAGTCCTTAAGTTAATAGCACTTTTGGACCACACAAATGTGAAGGTGGTCGAGGCAGCACTTGCAGCCTTATCTACTTTAATAGAAGATGGAGTGGTTATTGAGCAAGGAGTATTGGTGCTTTGTGAAGCAGAGGGAGTGCAGCCAATACTTGATGTGTTACTTGAGAAAAGGACAGAGAATTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTATTGCGGACTGACGATATAGCATATGTAGTTTCTGGAGAGCAAAATGTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGCGACTATAGAACTCGGCAAATTGCTGAACGCGCTCTCAAGCATGTCGATAAGATACCCAACTTCTCTGGAATCTTTCAAAATGTGAAGACCTCTTAG 2439 0.4342 MMASSWDGSGSQSDDNLLFDRLHIEPMYDAFVCPLTKQVMSDPVTLENGQTFERQAIEKWFRECRESGRKLVCPLTLQELKSTELNPSMALRNTIQEWTSRNEAAQLDMARRSLNSGSPENETLQALKYVQYICKRSRSNKHTVRQAGLIPMIVDMLKNNSRKIRCRALETLRIVAEEDDENKEMLAEGDTVRTIVKFLNNELPKEREEAVSLLYELSKSETICEKIGSINGAILILVGMTSSNSEDLSTVEKADKTLENLEKFENNVKQMAENGRLQPLLTQLLEGPPETKLDMAGYLGELVLNNDVKVLVARTVGSSLINIMKSGNMKSREAALKALNQISCEPSAKFLIEAGILSPLVNDLFAVGPNQLPTRLKEVSATILASVVNSGEDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECQLLQVLVGLTNSQTTVVSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLKNLSPHMGQELADALRGSVGQLGSLIRVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDDGAFQMVISRVIAIRKGEIRGSRFTTPFLEGLVRILARVTYVLGDEPDALALCRDHNLAALFIELLQTNGLDNVQMISATALENLSLQSQNLTKLPELPSPGACASIFTCFGKQQVITGMCRIHRGVCSLKETFCLLEGQTVLKLIALLDHTNVKVVEAALAALSTLIEDGVVIEQGVLVLCEAEGVQPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYVVSGEQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFQNVKTS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0071 812 Coils Coil 254 274 - -
Lal21g0071 812 Gene3D - 314 483 IPR011989 -
Lal21g0071 812 Gene3D - 107 313 IPR011989 -
Lal21g0071 812 SUPERFAMILY RING/U-box 23 108 - -
Lal21g0071 812 CDD RING-Ubox_PUB 31 78 IPR045210 -
Lal21g0071 812 Pfam U-box domain 29 103 IPR003613 GO:0004842|GO:0016567
Lal21g0071 812 Gene3D - 570 801 IPR011989 -
Lal21g0071 812 SUPERFAMILY ARM repeat 453 801 IPR016024 -
Lal21g0071 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 106 IPR013083 -
Lal21g0071 812 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 808 - -
Lal21g0071 812 SMART Ubox_2 30 98 IPR003613 GO:0004842|GO:0016567
Lal21g0071 812 SMART arm_5 179 219 IPR000225 GO:0005515
Lal21g0071 812 SMART arm_5 137 177 IPR000225 GO:0005515
Lal21g0071 812 SMART arm_5 305 344 IPR000225 GO:0005515
Lal21g0071 812 SMART arm_5 587 628 IPR000225 GO:0005515
Lal21g0071 812 SMART arm_5 715 756 IPR000225 GO:0005515
Lal21g0071 812 SMART arm_5 264 304 IPR000225 GO:0005515
Lal21g0071 812 SMART arm_5 669 710 IPR000225 GO:0005515
Lal21g0071 812 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 808 - -
Lal21g0071 812 ProSiteProfiles U-box domain profile. 26 105 IPR003613 GO:0004842|GO:0016567
Lal21g0071 812 SUPERFAMILY ARM repeat 107 441 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0071 Lal-Chr21 502016 507152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0071 3 809 U-box Gene Family AT1G76390 63.951 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0071 - - adu:107460240 1395.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0071 21 502016 507152 Lal21g0071 21 502016 507152 ECH