Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0065 ATGACTCGTCTTATTAGATTTTTAACCGACGACCACCCCTCTCCTCATTCCTCCGTCGTTCACTCCGATTACGTCGTCATTCTCGCCGCACTCCTCTGTGCTCTCATCTGCGTCCTCGGCCTCCTTGCCGTTGCTCGCTGCACCTGTCTCCGCCGCCTCCGTATCTCCTCCGCCGCCTCCGTATCTCCTCCACCTCCTCCTCTCCCTGCACCCAACAAAGGCCTCAAAAAGAAGGTCCTCCGCTCCCTTCCCAAGCTCACTGCCACAGCTGAATACGCTGTCAAACTATCCGATTGCGCTATCTGCCTGACTGAATTCGCTGCCGGCGAGGAGATTCGAGTGCTTCCTCACTGCGGCCATGGATTCCACGTCAGCTGCATCGACACGTGGCTCAAATCGAATTCTTCGTGTCCGTCGTGCCGTCAGATTCTGACGGTTTCACGGTGCCAGAAGTGCGGCGGTTTCCCTGCCTCCACCAGCTCGAAGGTTATGGAAAGAGAGAACGATGTTAGGTTGAAGTTGAAGGGTGAGGAAGGAGATGATGGCCCTTGCTCCAACCATCGCAATCGTATTCGTATTCGCATTCGCATATCAAATTCAGGGATCTCCAAATTCAGCACTCAACAATTGAAGCAACGTTTAACAATTTCCATTTCCAAATTTCATCATCAACTTGTTACTTCCAACCTCCTACCACTCCCCTCCCTCCAGTTGAATGGAAGCAAGTTTCCCATTTGGGTGTGTGTTGCGGTTGTTGTTTTGGTCGCAACAATGCGGGAACTGTTTTCCAGAACCAGAAGAAAGGAAATCCCTGGTTCCGTAGCTGATCTCGTCAGACGTGGCCAACTTCGATCTGATAGAAGAGGCATATCAAGGCCTCTCAAGTATGAAGATCCATTCAATAATCCCTTGGTCAAGGTTGGAAAAACCAACTCAACTGTTGAGATGTGCGGAAAGGTTTACCGCTTAGCGCCTGTTACTCTGACTCAAGAACAACAAACCATCCACCAGAAAAGGAGGTCCCGTGCATACCACTGGAAGCGACCTACTGTCTTTCTTAAAGAAGGAGAGTCGGTTCCTCCGGATGTTGATCCTGATACAGTTAGGTGGATTCCTTCTAATCATCCCTTTGCAACTACTGCTGTTGATCTTGATGAGGACTTGGCACAGAGCAATGTGTATCAAAAGCATGGTGTTCCTTTCCGTATTAGAGCTGAGCACGAGGCTCTGCAGAAAAAGCTTGAAGCCCTACAAAATGAACAAAAACTCAATAAACTGGTGATAGATCCTGCCAATGCTAAAGAATTTGAGAGACCACTCAACTCCCATGCCAGATTAAATGATAATGTAGAGAAGAGCCCTTTAAACATTCAACATCAAGCCAGTGATTCTCCCTCCCCTAAATTAGATGGTGGCCCTAATCATTTTGAAAGTGCAACGTCATTCGAAGAAGATCTGAGTCTTTAG 1467 0.4847 MTRLIRFLTDDHPSPHSSVVHSDYVVILAALLCALICVLGLLAVARCTCLRRLRISSAASVSPPPPPLPAPNKGLKKKVLRSLPKLTATAEYAVKLSDCAICLTEFAAGEEIRVLPHCGHGFHVSCIDTWLKSNSSCPSCRQILTVSRCQKCGGFPASTSSKVMERENDVRLKLKGEEGDDGPCSNHRNRIRIRIRISNSGISKFSTQQLKQRLTISISKFHHQLVTSNLLPLPSLQLNGSKFPIWVCVAVVVLVATMRELFSRTRRKEIPGSVADLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKTNSTVEMCGKVYRLAPVTLTQEQQTIHQKRRSRAYHWKRPTVFLKEGESVPPDVDPDTVRWIPSNHPFATTAVDLDEDLAQSNVYQKHGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDPANAKEFERPLNSHARLNDNVEKSPLNIQHQASDSPSPKLDGGPNHFESATSFEEDLSL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0065 488 Pfam Ring finger domain 98 141 IPR001841 -
Lal21g0065 488 SMART FANCL_C_2 95 149 - -
Lal21g0065 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 146 IPR013083 -
Lal21g0065 488 MobiDBLite consensus disorder prediction 450 467 - -
Lal21g0065 488 MobiDBLite consensus disorder prediction 450 488 - -
Lal21g0065 488 CDD RING-H2_PA-TM-RING 98 141 - -
Lal21g0065 488 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 186 484 IPR034572 GO:0009507|GO:0010020
Lal21g0065 488 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Lal21g0065 488 SUPERFAMILY RING/U-box 83 147 - -
Lal21g0065 488 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0065 Lal-Chr21 464648 469167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0065 1 152 C3H Transcription Factor Family AT1G20823 61.585 6.32e-58 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0065 - - gmx:100812404 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0065 21 464648 469167 Lal21g0065 21 464648 469167 ECH