Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0060 ATGAACATGTCGCATCAACATCTCACTATTTCGAAACCCTTGGAAGCACCCACCACCGTTCCAATTCCCGTGGGAAACTCGGAACCTGTGAAAAGGAAGAGAGGAAGGCCAAAGAAAAATGAGGTCAATGATTCAGTCACAACTTCTTTTGCCCCAACTAGTTTGGTTCATTCTGGATCAACAGATACAGTAGCTCCTGCTACTCCTTTTCCTGCTGTTGATGCTTCTACCTCAACAGTGAAAAAGAGAGGCAGACCTCGTGGTTCAATTAATAAGCAACGTGACATCACAGAACCCCAAGATAAATTGACACATCATGTTATTACTGTGAAAGCTGGGGAGTGTATTTCGACAAAGATAATGGCCCTTTCTTTTGATGTCAATAGCAATCTTTGCATATTAACTGCGAATGGAACCATTTCTCGGGCGACACTTCGTCATCCTTCATCTGGATCAGTGACTTATGAGGGACAATACGATATCATTGCACTTGGTGGGTCGTTGCTGTTGCTTTCTGATAAAAGTGGTTCATCACACAGGTCTGGTGGATTGAATGTATCTTTGTTTGGGCCAAATGGTCTTGTACAAGGTGGCGTTACAGGTGGTTTGATTGCTGCTTCCACTACTCAGGTAGTTTTATTGAGCTTTGCAGGTAAATATTGCAGTGAATCCGAGTTGGTGAATCAAGCAACAAGTTCATCTACCCCATTGGGTTAA 717 0.431 MNMSHQHLTISKPLEAPTTVPIPVGNSEPVKRKRGRPKKNEVNDSVTTSFAPTSLVHSGSTDTVAPATPFPAVDASTSTVKKRGRPRGSINKQRDITEPQDKLTHHVITVKAGECISTKIMALSFDVNSNLCILTANGTISRATLRHPSSGSVTYEGQYDIIALGGSLLLLSDKSGSSHRSGGLNVSLFGPNGLVQGGVTGGLIAASTTQVVLLSFAGKYCSESELVNQATSSSTPLG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0060 238 Gene3D - 104 231 - -
Lal21g0060 238 SMART AT_hook_2 31 43 IPR017956 GO:0003677
Lal21g0060 238 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Lal21g0060 238 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 21 229 - -
Lal21g0060 238 CDD DUF296 106 216 IPR005175 -
Lal21g0060 238 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 21 229 IPR039605 GO:0003680
Lal21g0060 238 Pfam AT hook motif 31 41 IPR017956 GO:0003677
Lal21g0060 238 Pfam AT hook motif 81 92 IPR017956 GO:0003677
Lal21g0060 238 ProSiteProfiles PPC domain profile profile. 99 237 IPR005175 -
Lal21g0060 238 MobiDBLite consensus disorder prediction 42 65 - -
Lal21g0060 238 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 221 - -
Lal21g0060 238 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 217 IPR005175 -
Lal21g0060 238 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0060 Lal-Chr21 448881 450750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0060 27 216 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 43.500 2.16e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0060 - - lang:109342461 351.673