Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0057 ATGGGTCGTGGAAGAATGGAGCTGATAAAGAAGGAGAAAAATCGCATGATAACATTCCAAAAGAGAAAGGAAGGGTTAATGAAGAAAGCTTATGAACTTTCTACTCTTTGTGGCATTGATGTTTGTGTAATTATCTATGCCCCACACTTTGATGACCAAGGGTCTCAATTTGAGACATGGCCTAAAGATACCAAAGAGGTATACCGAATTATTGAAAAGTATAATAACACCACTATTGATAGGATTCCTAAGATCTATGATGTGCAAGAATATTATAAGGATAGGATTAAAAAAGTTGAAGGTGAAATAGCCAAAGTGCAAAGAGAGAAGTTGAAGATCATGTATCCAACTTGGGATGACTCTTTCAATGCAATGGGAGAAGAACAATTGAGGATGTTTGCTACTATGTTGGATAATAAACTTGATGTTTGTAATCAAAGAATCAATGTGTTGAAACAAGACCAAAAGGGAAGAGTAATAACAGAAGAATTACCATTAATCAAAGGTGAGATGGTTATACCTAACTTGGCCTCAAATTCAAGCAGCTATCACAATTTCTTGACTAACATATATGAAGGACAAGTTTATCCTATTCCTCATATGAAGCCAGTTAGTGATAACAACAACCATGTACCATTTTACCCTTTCAACCTTGGCCAGAATTCTCAGTCCTCTATGCTTCATTTTCAGACTCCTAATTCTCAGAGCCTGCATTATGAGGCACCTTTTCAGCTTAATGGATTATACAATACAAATGCACTTCAACCTCAAATGTTCAACTACATGCATGGATGGAATAATAGGCCATAG 810 0.3605 MGRGRMELIKKEKNRMITFQKRKEGLMKKAYELSTLCGIDVCVIIYAPHFDDQGSQFETWPKDTKEVYRIIEKYNNTTIDRIPKIYDVQEYYKDRIKKVEGEIAKVQREKLKIMYPTWDDSFNAMGEEQLRMFATMLDNKLDVCNQRINVLKQDQKGRVITEELPLIKGEMVIPNLASNSSSYHNFLTNIYEGQVYPIPHMKPVSDNNNHVPFYPFNLGQNSQSSMLHFQTPNSQSLHYEAPFQLNGLYNTNALQPQMFNYMHGWNNRP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0057 269 Coils Coil 89 109 - -
Lal21g0057 269 CDD MADS_SRF_like 6 75 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal21g0057 269 Gene3D - 11 97 IPR036879 GO:0003677|GO:0046983
Lal21g0057 269 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677|GO:0046983
Lal21g0057 269 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677|GO:0046983
Lal21g0057 269 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lal21g0057 269 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lal21g0057 269 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 2 209 - -
Lal21g0057 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 49 IPR002100 GO:0003677|GO:0046983
Lal21g0057 269 SUPERFAMILY SRF-like 3 97 IPR036879 GO:0003677|GO:0046983
Lal21g0057 269 PANTHER MADS BOX PROTEIN 2 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0057 Lal-Chr21 433715 434524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0057 1 239 Type I MADS-box Gene Family AT5G55690 30.469 8.31e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal21g0057 SRF-TF 3.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0057 - - lang:109350953 300.827