Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0056 ATGGAGAATGGTGAGTGTGAGAAACCCTGTGATATGGAGATTGTTGTAGGTGACGTCACTTCGCAACAACAAGGTACTGTTGATGATGATAACAAGAATGACGATTCTATCCTCACTCCTCTTCCTCTTCAAACAATTACTCAAAATAATCATCCCAAGACTAAAGAAATCAAAAGCGTTTTAAATGACAGTGAGATGAGTGAGTATGATGAAACTGGTTCCCCTTCAGAGCAAGAAGCGTTTATGAAAGAGTTGCAATGTTTTTATAGAGAAAGGTCTTTGGAATTTAAGCCTCCTAAGTTTTATGGTGTTCCACTCAATTGCCTCAAGTTATGGAGAGCTGTTATCAAATTGGGTGGCTATGATATCGTAACTGGATCCAAGTTATGGCGACTAGTAGGAGAGTCTTTCCATCCCCCTAAGACATGCACTACAGTCTCATGGACGTTTAGAATATTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAGACTGGGGAGCTGCAGCTACCTGTTGGATCATTCCATCAACCTTCAAGTGTAGAAAAGGAGACCACTGTTTACCAGACTCCAGGCTCAGGTAGAGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCAATATGGTGATGTTGCTGAGCAAGTTAGTAAGGACAAGAACTTCAGTCCCACGACAAAGCGTGAAAAGAACCTCAAAAGTATTGGTGTGATTAATAAACAGAGGACCCTGACTGGTCTAGAGCAGGCTGAGAAAGCTGCAAATATTGATGGAGATAGGCAATTGGTCACACCAGTTGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAGGTGTATGCACTAGTTCCCGGGCTCCTTCGTGAGGAGGTGAGAGTCCAATCAGATCCAGTTGGACGTGTTGTTATAACTGGTCATCCAGAACAGGTTGACAATCCATGGGGAATTACCCCTTTCAAAAAGGTTGTGAACTTACCAGCAAGAATTGATCCACTGCAGACAACTGCTGTGGTTAGTTTGCACGGTCGTCTATTTGTGCGTGTTCCTTTTGAGCAGGGAGCTATATGA 1125 0.4382 MENGECEKPCDMEIVVGDVTSQQQGTVDDDNKNDDSILTPLPLQTITQNNHPKTKEIKSVLNDSEMSEYDETGSPSEQEAFMKELQCFYRERSLEFKPPKFYGVPLNCLKLWRAVIKLGGYDIVTGSKLWRLVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKRETGELQLPVGSFHQPSSVEKETTVYQTPGSGRARRDAAARAMQGWHAQRLQYGDVAEQVSKDKNFSPTTKREKNLKSIGVINKQRTLTGLEQAEKAANIDGDRQLVTPVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRVVITGHPEQVDNPWGITPFKKVVNLPARIDPLQTTAVVSLHGRLFVRVPFEQGAI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0056 374 SMART bright_3 76 167 IPR001606 GO:0003677
Lal21g0056 374 CDD ARID 77 162 - -
Lal21g0056 374 Gene3D - 275 373 IPR008978 -
Lal21g0056 374 SUPERFAMILY HSP20-like chaperones 282 369 IPR008978 -
Lal21g0056 374 SMART ARID_2 72 162 - -
Lal21g0056 374 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 29 371 IPR045147 GO:0006357
Lal21g0056 374 CDD ACD_sHsps-like 288 368 - -
Lal21g0056 374 Pfam Hsp20/alpha crystallin family 289 370 IPR002068 -
Lal21g0056 374 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 273 374 IPR002068 -
Lal21g0056 374 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 29 371 - -
Lal21g0056 374 ProSiteProfiles ARID domain profile. 75 166 IPR001606 GO:0003677
Lal21g0056 374 Gene3D - 76 174 IPR036431 GO:0003677
Lal21g0056 374 Pfam ARID/BRIGHT DNA binding domain 77 162 IPR001606 GO:0003677
Lal21g0056 374 SUPERFAMILY ARID-like 71 173 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0056 Lal-Chr21 424761 429941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0056 17 371 ARID Transcription Factor Family AT1G76510 63.158 1.52e-151 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal21g0056 ARID 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0056 - - lang:109344023 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0056 21 424761 429941 Lal21g0056 21 424761 429941 ECH