Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0033 ATGGCTAAACCGAAGGCTGGAAAAAGAACCCTAGAGTCATACACAGTCAAACACATAAGCAAAACAATTAAAGGTGGGGATTGTGTGATGATGCGGCCATCTGATCCATCAAAACCGTCATATGTTGGAAGGATAGATCGCATTGAAGCTGATTGGAGAGGCTCGAATGTGAAGATTCACGTTCAGTGGTACTATCGGCCGGAGGAGTCTATTGGTGGCCGCCGTCAATTTCATGGCTCTAAGGAGTTGTTTCTTTCTGATCACTTCGATATTCAGAGTGCAGACACTATTGAATCTAAATGTACTGTTCACACCTTCAAGAGGTACAACAACCTTGATGCTGTTGGAAACGATGACTTCTTCTGTCGTTTCGAGTACAATTCCTCCACTGGTGCTTTCAATCCTGATAGAGTCGTTGTGTATTGCAAATGTGAGATGCCTTACAATCCTGATGACTTAATGGTCCAGTGTGAGGGATGCAGTGACTGGTTTCATCCTGCTTGTATAGACATGACTGCGGAGGAAGCCAAGAGACTTGACCACTTCTTTTGTGAAAATTGCTCAGCTGAAGGTCAAAAGAAGTTGCAAAATTCTCATTCTTCTGTGAGACTTTCAGATACAAAGGTGGATACTAAACGCCGTAGAAGGTAA 651 0.4332 MAKPKAGKRTLESYTVKHISKTIKGGDCVMMRPSDPSKPSYVGRIDRIEADWRGSNVKIHVQWYYRPEESIGGRRQFHGSKELFLSDHFDIQSADTIESKCTVHTFKRYNNLDAVGNDDFFCRFEYNSSTGAFNPDRVVVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTAEEAKRLDHFFCENCSAEGQKKLQNSHSSVRLSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0033 216 Pfam PHD-finger 141 189 IPR019787 -
Lal21g0033 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lal21g0033 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lal21g0033 216 Gene3D - 1 135 IPR043151 -
Lal21g0033 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lal21g0033 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Lal21g0033 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Lal21g0033 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lal21g0033 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Lal21g0033 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 202 IPR013083 -
Lal21g0033 216 SMART PHD_3 141 188 IPR001965 -
Lal21g0033 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0033 Lal-Chr21 289363 293552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0033 31 127 Core DNA Replication Machinery Family AT4G12620 28.866 1.06e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal21g0033 BAH 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0033 - - gmx:100787968 415.616