Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0028 ATGGATAAGGAAGACGATGAAATTCCAACTCTACTCTCTCATGATCTTTCAATCAAACAACAAGATGGAGGAATCGTGATCGCAGATGTGTTACCTGATGAAGGAGACAAATCTGTGGATGATATAGGTCATGGAATTGATGTCGTGGCATCTGGGAAGACCGAAGCTGCTGTGGTTGTATCGGAGGAGAGAGAGGTTTCCGATTCAGTTACCGAGTGCCAACAAATTCAGGGTAATGAGATATTGGATGAGGATAAAGTAGCTTCAGCTATTGACGAAGCTGAGAATGTGATTCAGAATAAGACAGTGGACGAGGGAACTGAGGTTGATGACGTGGAGACTGGAAAGGCGGAAGAAAAGGAAGAAGAATATGATGATAGCGCTGATGAAGTAGACGCCGAAATTGGTCATACTCAGGGAACTGATGATGTAATCACAGATGAAAAGGAGGCACCGAATGAAGAACAAGAAGAAGAGAAGGTGCTAAGTGTTCATGACGTTGATAACGATGATGGTGTTGGTGATGATACAACACAAGATACAGACACTGCTGCTTTGATGGGAGAAGGAGAAGGAGAAGAAGAAGCTGGTGATGGTGATGGTGATGGTATGGCTCAAGATATAGAAGAAGAAGAAGAACAAGAACAAGGAGGTGGTGGTGATGGTATGGAAGAAGATGATGAGGTGAGAGAGGAGCAGAGTGAAACTGTGAGTAGTGGGAAGAGAAAGCGTGGGCCTGCCAAGAATTCTAAGACAACAAGGAGAGTTGCTTCCAAGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTTGATGGTGGTGACCTTGTGCTTTGCAACCGCAGGGGATGTCCAAAGGCTTACCATCCTTCATGTGTTAATCGTGATGAAGCCTTTTTTCGAACCAAGGGAAAATGGAATTGTGGTTGGCATCTTTGCAGTAACTGTGAGAAGAATGCTCACTATATGTGCTATACATGTACATTCTCTTTGTGCAAGGGATGCATCAAAGATGCTATTATCTTTTGTGTTAGGGGAAACAAGGGCTTTTGTGAAACATGCATGACAACTGTGATGTTGATTGAACAGAATGAGCAGGGAAACACGGGACAAGTGGATTTTAATGATAAAAATAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCTTTAACATTTGATGAACTTACTGAAGCTAAAAACCCTTGGAAGGGATCTGATATGGCTGCATCCAAAGATGATTCACCAGATGAACTTTACGATGCCAACAATGATAGAGGATCTGATTCAGATAACTCCTACGAGAATGTAGGTTCAAGTCGTTCTAAAAAAAGGAAAGGCAAGAAACGGGCAAAATCTCGTTTGAAAGAAGGGAATTCATATGCAGCAACAGTGCTTGCTGCTAATGTGACATCTGCAGATGACCGATCTGAATGGTCTTCAAAAGAACTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACACATCTATTTTGTCTCAGTTTGATGTTCAAGCTCTTTTGCTAGAGTACATTAAAAGAAATAAGCTTCGGGACCCTCGCCGAAAAAGTCAAATCATTTGTGATGCAAGGCTTCAAAGTTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCTCATTTCCTTTTAAAAGAGGACTACCAGGGTGAAGATCTGCAGGGGAGTGTCGTTGATACTGAAGTTACTCATTTAGATGGTGATGGAAACTCCGATTCATATCTCAAACCTGGCAAAGATAAGAGACGTAAAACTCGTAAAAAGGGTGATGAGAGAGGACTCCATTCTAATGTTGATGATTATGCAGCTATTGATAATCATAATATCAATTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGACAATTTTCATGATAAAGCTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGCAGGTACGTGCAAAGCAGCAGAGCCATATAAAGTGGGTAAAAGGATGACAGATATCTTGCTAGAGATTTTAAATTTAAACAAGACAGAGATTGTTTCAATTGATATTATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAACGTCTTCGCCAAAGCATAAAGTGTGGACTTATAAATCGACTAACTGTGGGCAATATTCAGGACAAGGCATTTGCACTTCAGTCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTAAGTCATCTTCGTGATAGAGCTAAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGGAGATTGGAGGAAGTTCCAGAAATACATGTGGATCCCAAAATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGAATGATAAAGGACAAGAAAGTTATATGAGACCTAGAGGATCTGCTGCATTTGGAAGGAAGGCCAGGGAAATTGTTTCTCCTAGAAGTGGTTCAAGTGATTCTTGGAGTGGAACAAGGAATTATTCTAATGCTAATAGGGAACTCGGCAGAAATTTGTCTAATAAGGGGTTTTCAATTAAAGGCGATGATGTTTTTAATTCTAGTGAGGCATTAAATGATGCTCAATCGCGAGATAGGGAATTGCAACTATCTAATAGCAGGGAGAGGCAAAGACTATCTTCAAGCTCTGAAATTGGTGCGAAAAATGCCCAGCCACTGGTAGCATCTGAGTCTTTCTCTAATGCTGTGTTAGAACCTTCTGCAGCACCATCTTCTGCCGGAATAGCTTCCCCCACCGTGAAAATTAACGAAAGTGAAAAGATGTGGCACTATCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTTCAGCTTCGAAAATGGAATAACACCGGTTACTTTCCTGCCGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGAGTCCATGCCCTTAAAAGATGCCTTAGATGGAAAGTTTTCTAAGGAATCACCAGTGGTGGATATAACTCTCCCTAAGGCTCAAATGGTGCATGATTTACATAACTCGTCCTCGTACCTTGGGAAATCTCATTTGGCTGCACAACAAGGTACAATTGAAAGTCAAGTTGGAGCAAGACCAGCATTTGATCAAAACAGTGGATCTTGGAATTCTTCACATAGTTCTCTGGGTTCTCTTGGCCAAACTACAGGAGGAAGTAGACCTTCTCCATTGGTAGTCGAGGTCCCCAAGACTACTTCAGATGGATGGGGCTCTAATGTTGGTGTTAGGAATGAATCAACAAATCTTCCTTCGCCCACTCCTCAAACTCCTTCAGTTGGGACTATGGTGCAGGGTTTTGAAAATAATTGGTCACCGACACCCATATCAGGAAACACAAACCTTAGTGGCCTTGGAGGTTTGCAGATGCAAAATGCTGAAAATGGCTTGAGTTTACGACCTGTTATGATGTCAGCTTCTACTACTCAAGTACATACTCAAGCAACCGTGCTGGCACCTGGTCTGCAAAACCAGGTTGTGAGTAGCCATAACTCTCATGCTGGAGCTCAAGGGTGGGGTTCTGGTTTGGTTTCAAAGGTAGAACCACAGTCCTTGGGAGCTACTCCATCTCAAAGGGTAGAACCTAATAATCATGCTACCTTGCCTGTCCATAACTCTGCCTCATTTATCACTGGTAATCTAGCTGGGAGTTTCCCTGCACAAAGCTATCCCAGCCAATCAAACATTTCAGCTCCAGCTCCACCTAATAATATGCCATGGAACATGGGTGTTGTACAAAATCAAAATGCTACTGCTTGGAGCGGCATGCCAGGAAATCAGAATACCGGTTGGGCTGGGGGAGCTCTTCCCACCAATGTGAATATGAACTGGATGCCTGCGCAGGTGCCAGCACCTGGAAATGCTAATCCGGGATGGGCTGCTGCACCTGGGCAAGGGCCACCACCGCCCGTAAATGCAGCTGGTTGGGTTGCACCTGGTCAAGGACGACCACATGTAAATTCCAACATGGGTTGGGGTCAAGGGCATGCACCAGGAAATGCCAATCCTGTTTGGCCTGCATCGGTTGGGAATCAAGGTACATGGGGAGGAGGTGAACATAATCATAATGGAGAGAGACTTGCCAACCAGCGTGATCGTGGTACCCATGGTGGGAGAGATTCTGGTTATGGAGGTAAACCTTGGAGTAGGCAGACATCATTTAACAGCGGAGGAAGCAGAGGAGGAGGTTCATCCAGGCCTCCTTTTGGGGGACAGAGAGTTGCATGCAAGTTCAATGAAAGTGGACGTTGCAAGAAAGGGGATTCATGTGATTTTATGCACACTTAA 4374 0.4291 MDKEDDEIPTLLSHDLSIKQQDGGIVIADVLPDEGDKSVDDIGHGIDVVASGKTEAAVVVSEEREVSDSVTECQQIQGNEILDEDKVASAIDEAENVIQNKTVDEGTEVDDVETGKAEEKEEEYDDSADEVDAEIGHTQGTDDVITDEKEAPNEEQEEEKVLSVHDVDNDDGVGDDTTQDTDTAALMGEGEGEEEAGDGDGDGMAQDIEEEEEQEQGGGGDGMEEDDEVREEQSETVSSGKRKRGPAKNSKTTRRVASKKKMEEDVCFICFDGGDLVLCNRRGCPKAYHPSCVNRDEAFFRTKGKWNCGWHLCSNCEKNAHYMCYTCTFSLCKGCIKDAIIFCVRGNKGFCETCMTTVMLIEQNEQGNTGQVDFNDKNSWEYLFKDYYIDLKEKLSLTFDELTEAKNPWKGSDMAASKDDSPDELYDANNDRGSDSDNSYENVGSSRSKKRKGKKRAKSRLKEGNSYAATVLAANVTSADDRSEWSSKELLEFVMHMRNGDTSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQSLFGKPRVGHFEMLKLLESHFLLKEDYQGEDLQGSVVDTEVTHLDGDGNSDSYLKPGKDKRRKTRKKGDERGLHSNVDDYAAIDNHNINLIYLRRNLVEDLLEDTDNFHDKAVGSFVRIRISGSGQKQDLYRLVQVAGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGNIQDKAFALQSVRVKDWLETEIVRLSHLRDRAKKLQLLKTPEERQRRLEEVPEIHVDPKMDPSYESEEDEDEMNDKGQESYMRPRGSAAFGRKAREIVSPRSGSSDSWSGTRNYSNANRELGRNLSNKGFSIKGDDVFNSSEALNDAQSRDRELQLSNSRERQRLSSSSEIGAKNAQPLVASESFSNAVLEPSAAPSSAGIASPTVKINESEKMWHYQDPSGKVQGPFSMVQLRKWNNTGYFPADLRIWRTTEKQDESMPLKDALDGKFSKESPVVDITLPKAQMVHDLHNSSSYLGKSHLAAQQGTIESQVGARPAFDQNSGSWNSSHSSLGSLGQTTGGSRPSPLVVEVPKTTSDGWGSNVGVRNESTNLPSPTPQTPSVGTMVQGFENNWSPTPISGNTNLSGLGGLQMQNAENGLSLRPVMMSASTTQVHTQATVLAPGLQNQVVSSHNSHAGAQGWGSGLVSKVEPQSLGATPSQRVEPNNHATLPVHNSASFITGNLAGSFPAQSYPSQSNISAPAPPNNMPWNMGVVQNQNATAWSGMPGNQNTGWAGGALPTNVNMNWMPAQVPAPGNANPGWAAAPGQGPPPPVNAAGWVAPGQGRPHVNSNMGWGQGHAPGNANPVWPASVGNQGTWGGGEHNHNGERLANQRDRGTHGGRDSGYGGKPWSRQTSFNSGGSRGGGSSRPPFGGQRVACKFNESGRCKKGDSCDFMHT 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0028 1457 MobiDBLite consensus disorder prediction 1344 1432 - -
Lal21g0028 1457 Gene3D SWIB/MDM2 domain 474 569 IPR036885 -
Lal21g0028 1457 SMART swib_2 487 565 IPR019835 -
Lal21g0028 1457 CDD SWIB-MDM2_like 487 560 - -
Lal21g0028 1457 Pfam GYF domain 955 995 IPR003169 GO:0005515
Lal21g0028 1457 SUPERFAMILY Plus3-like 622 751 IPR036128 GO:0003677
Lal21g0028 1457 SUPERFAMILY FYVE/PHD zinc finger 258 311 IPR011011 -
Lal21g0028 1457 ProSiteProfiles Zinc finger PHD-type profile. 264 330 IPR019787 -
Lal21g0028 1457 ProSiteProfiles SWIB/MDM2 domain profile. 479 562 IPR003121 -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 1386 1401 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 884 913 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 1056 1120 - -
Lal21g0028 1457 ProSitePatterns Zinc finger PHD-type signature. 267 327 IPR019786 -
Lal21g0028 1457 Gene3D - 953 1012 IPR035445 -
Lal21g0028 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 358 IPR013083 -
Lal21g0028 1457 CDD PHD5_NSD 266 311 - -
Lal21g0028 1457 SUPERFAMILY SWIB/MDM2 domain 485 561 IPR036885 -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 155 172 - -
Lal21g0028 1457 Gene3D - 623 751 IPR036128 GO:0003677
Lal21g0028 1457 MobiDBLite consensus disorder prediction 840 865 - -
Lal21g0028 1457 ProSiteProfiles GYF domain profile. 952 1006 IPR003169 GO:0005515
Lal21g0028 1457 SMART PHD_3 266 312 IPR001965 -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 416 431 - -
Lal21g0028 1457 ProSiteProfiles Zinc finger C3H1-type profile. 1432 1457 IPR000571 GO:0046872
Lal21g0028 1457 CDD Bbox1 312 338 - -
Lal21g0028 1457 SMART rtf1 621 731 IPR004343 GO:0003677
Lal21g0028 1457 MobiDBLite consensus disorder prediction 1408 1424 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 131 147 - -
Lal21g0028 1457 ProSiteProfiles Plus3 domain profile. 621 754 IPR004343 GO:0003677
Lal21g0028 1457 MobiDBLite consensus disorder prediction 579 611 - -
Lal21g0028 1457 PANTHER UNCHARACTERIZED 77 1457 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 784 865 - -
Lal21g0028 1457 Pfam SWIB/MDM2 domain 487 560 IPR003121 -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 99 256 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 1095 1120 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 1056 1084 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 187 232 - -
Lal21g0028 1457 Pfam Plus-3 domain 626 729 IPR004343 GO:0003677
Lal21g0028 1457 SMART gyf_5 953 1008 IPR003169 GO:0005515
Lal21g0028 1457 MobiDBLite consensus disorder prediction 784 802 - -
Lal21g0028 1457 SUPERFAMILY GYF domain 944 1005 IPR035445 -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 115 130 - -
Lal21g0028 1457 MobiDBLite consensus disorder prediction 410 462 - -
Lal21g0028 1457 CDD GYF 952 1005 IPR003169 GO:0005515
Lal21g0028 1457 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 77 1457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0028 Lal-Chr21 232955 241789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0028 264 335 PHD Transcription Factor Family AT5G36670 36.000 2.93e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal21g0028 Plus-3 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0028 - - gmx:121174757 1645.56