Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0013 ATGTTTGATATGAGAGGAAGATGTGCATTAGAAATTACACTTAAGTTTTGGGTTGTGGGGGAGAATGTGATATTTCATATTTCCTTATCTAAAGCCAGAAACAAAGTGAGAAGTGCAATGGGTTGTTCAAATTTGTTCAGCAACGGCGCTGTTTATGTTTCACTCACAACCAAATACAACAACCACTCTTTCTCTCTCTCTTTCACCCCATCCGCTAAAACCTCTCCAACTCAAGTCACACATGTTATAACAAACAATGATTCTTCACTCAAACCAAGTTTTGGAAGACTAAAACCCCAGAAACTCAAACCTCTTATCCACAAAACCAAACCCCAAAAAAAAAGCAGCAGTAACAGGAATAGGGATAAGGATGATGATGATGATGAAAAAGAAGAAGATAATTCAAATGCAGCATCTCATTTCAAAGCATCAAAAGGAAGAGGATGGGGAGATGGTGGAGGATCTTACCGTGCCGAATCCTCACAAACATTTCTTAGAAAAACAACTCCTGATACCAACTTTTTCAGTCTCAAGTCCTTCACTGATTTAGGGTACAGTCACTATATGGTTCAATCCTTGCAAAAACTCTCTTTTACCCGCCCTTCCCATATACAGGCCATGGCATTTGCACCTGTTATTGGTGGAAAGACTTGTGTTATAGCTGATCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGTACCAATAATTCAGCGTCTTAGACAAGAAGAACTTGATGGACATAGTAAATCCTCTTCACAAGCTCCTAGAGTCGTTGTACTTGCACCAACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCAATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTATCACCGGTGGCTTTCGGCAAAGAACTCAGCTGGAAAATTTAAAGCAGGGTGTTGATGTATTAATTGCTACACCTGGCCGTTTTTTGTCTCTGATAAAGGAAGGGCAGTTACAGTTAACAAATCTAAGATGTGCTGTGCTGGATGAGGTAGATATACTATTTGGTGATGAAGACTTTGAAGTAGCTCTCCAACACTTGATTAATTCTTCACCAGTTGCTACTCAATATTTGTTTGTGACTGCAACTTTACCAAAAGATATTTACAGCAAACTGGCTGAAGTTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGTATAAGCTCTCGCCTTGAAGAGGTCCTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAAACTCCTGTCCCAAGAACTATTGTGTTCTGTAACAAAATAGAAACATGCAGAAAAGTTGAAAATGCATTGACTCGTTCTGATAGAAAAGGAAGTCATATACAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCATGCTAGTATGAAAGAGTTTACACGTTCTCCATCAAAACAAGTGTCCCAGTTTATGGTTTGCACTGACAGAGCATCAAGGGGAATAGACTTTGCTGGAGTGGATCATGTCATACTATTTGATTTCCCACGTGATCCAAGTGAATATGTGCGGCGTGTTGGAAGAACAGCAAGAGGTGCTAGGGGAGAGGGCAAGGCGTTTATCTTTGTGGTTGGGAAGCAAATCTCACTTGCACGCAAAATAATGGAAAGAAATCGCAAGGGTCACCCACTGCATGATGTACCCTCGGCTTATGAGCTATGA 1752 0.4064 MFDMRGRCALEITLKFWVVGENVIFHISLSKARNKVRSAMGCSNLFSNGAVYVSLTTKYNNHSFSLSFTPSAKTSPTQVTHVITNNDSSLKPSFGRLKPQKLKPLIHKTKPQKKSSSNRNRDKDDDDDEKEEDNSNAASHFKASKGRGWGDGGGSYRAESSQTFLRKTTPDTNFFSLKSFTDLGYSHYMVQSLQKLSFTRPSHIQAMAFAPVIGGKTCVIADQSGSGKTLAYLVPIIQRLRQEELDGHSKSSSQAPRVVVLAPTAELASQVLDNCRSMSKSGVPFKSMVITGGFRQRTQLENLKQGVDVLIATPGRFLSLIKEGQLQLTNLRCAVLDEVDILFGDEDFEVALQHLINSSPVATQYLFVTATLPKDIYSKLAEVFPDCEMIMGPSMHRISSRLEEVLVDCSGEDGQEKTPDTAFLNKKSALLQLAEETPVPRTIVFCNKIETCRKVENALTRSDRKGSHIQVLPFHAAMTQESRHASMKEFTRSPSKQVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGARGEGKAFIFVVGKQISLARKIMERNRKGHPLHDVPSAYEL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0013 583 CDD SF2_C_DEAD 402 553 - -
Lal21g0013 583 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 85 582 - -
Lal21g0013 583 SMART ultradead3 197 405 IPR014001 -
Lal21g0013 583 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 178 206 IPR014014 GO:0003724
Lal21g0013 583 Gene3D - 399 576 IPR027417 -
Lal21g0013 583 Pfam Helicase conserved C-terminal domain 426 542 IPR001650 -
Lal21g0013 583 Gene3D - 154 390 IPR027417 -
Lal21g0013 583 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 429 583 IPR001650 -
Lal21g0013 583 MobiDBLite consensus disorder prediction 84 158 - -
Lal21g0013 583 CDD DEADc 189 384 - -
Lal21g0013 583 Pfam DEAD/DEAH box helicase 203 376 IPR011545 GO:0003676|GO:0005524
Lal21g0013 583 SMART helicmild6 453 543 IPR001650 -
Lal21g0013 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 554 IPR027417 -
Lal21g0013 583 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 85 582 - -
Lal21g0013 583 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 390 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0013 Lal-Chr21 151713 156224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0013 177 564 Eukaryotic Initiation Factors Gene Family AT3G19760 26.735 3.47e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0013 K13179 - gmx:100784377 704.516