Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0006 ATGGAGAGTTTGAGGAAATCGTTGAAATCATATGGTTCTCGCAAACATGTAAGAAAAATATCAGCAGGTGGTGGAAGTCAAGAATCTGTGTTTGAAGAGCTCCCCATCCTTCTCTCCCAACAATCTTGTTCTGTCACTATCAAAAGCGACGATGAGGATAACAATATGATGAGGGATAATAAGAATGACAACAATAACAATAATAACAAACAGAAAATAATGTCACCATCTAGCATTGGTGAAATGGCCCTTGATATGGATTTAAAAATGGATGAGCTCCCTCTCCATGATTCATCTAATAGTAATAGTAATAGTAATACTAATGCTAATAATGAAGGTCCTCCAACAACTAGTTACAAAACAGCAACACCTCAATATTCCCTAAAACGCCCTCCTCATCCTCACCATGATAGGAACACCTCCAACTCTGCATTGCTCCTCAAAACAAAAACAAGATCGAGATTGCTTGACCCTCAATTCTCTCAGCCTCAACAACAAGACTACTCCAATCCTATCCCAAAGTCCTCAGGCCAACTCTTCTCCACCTTCATTGGCACCAAGAAGGGTGACAACGATGATGAAGATGATCCTTTCTTAGAAGAAGATCTCCCAGATGAGTATAAGAATGAGACTCATTTCAGCCTCTGGGTTCTCCTCGAGTGGTTGAGTCTCATTTGCATCATCACCGCCTTTATCTCCACCCTCTGCATCCCTTCCTGGAGGGACAAGAATCTTTGGGACCTTAGGTTATGGAAATGGGAGGTCATGATTCTAGTCCTAATATGCGGTCGATTGGTCTCTGATTGGGTCATCCGCATTGTTGTCTTCTGCATAGAGAGGAATTTCGTGTTGCGCAAGAGAGTCTTGTATTTTGTCTATGGTGTCAGGAAGGCTGTACAGAATTGCTTGTGGTTGGGTCTTGTCTTGATTGCTTGGCACTTATTATTTGATAAGAGAGTGGAGAGGGAAACCCAAACTGAATTTCTAAAATATGTGACTAAGGTATTGGTGTGTTTCTTGGTGGCCACGCTTGTGTGGCTTCTCAAAACTCTGGGGGTGAAGGTGCTGGCTTCTTCATTTCATATGAGCACCTATTTTGATAGGATTCAGGAGTCATTGTTTAATCAATTCATAATAGAGACGCTATCAGGACCACCAACCATAGAGGATGAGAAGCTAGCTTCAGAGGTACAAAAGCTGCAGAATGCAGGGGTGGCCATACCACCAGACCTAAGGGCCTCTGCCTTCCCAACAATCAAGAGTGGAAGGGTCAACAAGAGTGGAGTGCTTAAAAGTGCAACATTTTCTCAACGTTATTCCACTAAGAAGGTAGCAATGGATGATAATGGGATAACTATTGATCATCTTCATAAGTTGAATCCAAAAAATGTGTCAGCTTGGAATATGAAAAGGCTAATCAATATGGTCCGACATGGGGCTCTTACTACCCTTGATGAGCAAATACTTGATGATTCTACACAAGGGGATGAGTCAGCCAAGCAGATTAGAAGTGAAAATGAGGCTAAAGCAGCAGCCAAGAAAATATTTCACAATGTTGCTAGGCCTGGTTCCAGGTACATATACCTTGAGGATTTAATGCATTTTATGCGAGAAGATGAAGCTTTCAAAACCATATATCTCTTTGAAGGAGCATCTGAAACCAGTAAAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTGAATGCCTTCCGGGAGAGGAGAGCACTTGCATTGACATTGAATGATACCAAAACTGCAGTGATAAAACTCCATCGGATGCTGAATTTTATGGTGGCCATTATTGTAGTGATTATTTGGCTCTTAATATTGGAAATTGCCACCACCAAATTTATTGTGTTTGTAACCTCACAGGTTGTAGTGGTTGCATTTGTATTTGGAAATACCTGCAAAACCATATTTGAATCAATTATTTTCTTATTTGTCATGCATCCATTCGATGTGGGAGACAGGTGTGAAATTGACGGAGTCCAGATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTAAGATTTGACAATCAAAAGATCATGTTCCCTAACAGTGTCCTAGCTACTAAGGCCATACATAATTACTATCGGAGTCCGGACATGGGAGATGCTCTTGAATTCTTTATACATGTCACTACCCCGGCTGAAAACGTTGCACTTCTGAAACAAAGAATAGCGAGTTATGTTGATAATAAGAAGGAACATTGGTATCCTTCACCTACGATAGTGTTCAAGGATCATGAAAGTTTAAACATGATAAGAGTGGCAGTTTGGCCAACTCATAGAATGAACTTCCAAGACATGGCAGAAAGATTTCTGAGGAGATCCCTTTTGATTGAAGAGATGGTCAAGATTTTCAAGGACCTTGACATTCAGTACCGTCTCTTGCCCATTGATATTAACATTAGAACCATGCCTACCACTTCTGATCGTCTTCCACCTAGTTGGTCCACAATCACAAGTTGA 2481 0.4091 MESLRKSLKSYGSRKHVRKISAGGGSQESVFEELPILLSQQSCSVTIKSDDEDNNMMRDNKNDNNNNNNKQKIMSPSSIGEMALDMDLKMDELPLHDSSNSNSNSNTNANNEGPPTTSYKTATPQYSLKRPPHPHHDRNTSNSALLLKTKTRSRLLDPQFSQPQQQDYSNPIPKSSGQLFSTFIGTKKGDNDDEDDPFLEEDLPDEYKNETHFSLWVLLEWLSLICIITAFISTLCIPSWRDKNLWDLRLWKWEVMILVLICGRLVSDWVIRIVVFCIERNFVLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHLLFDKRVERETQTEFLKYVTKVLVCFLVATLVWLLKTLGVKVLASSFHMSTYFDRIQESLFNQFIIETLSGPPTIEDEKLASEVQKLQNAGVAIPPDLRASAFPTIKSGRVNKSGVLKSATFSQRYSTKKVAMDDNGITIDHLHKLNPKNVSAWNMKRLINMVRHGALTTLDEQILDDSTQGDESAKQIRSENEAKAAAKKIFHNVARPGSRYIYLEDLMHFMREDEAFKTIYLFEGASETSKISKSALKNWVVNAFRERRALALTLNDTKTAVIKLHRMLNFMVAIIVVIIWLLILEIATTKFIVFVTSQVVVVAFVFGNTCKTIFESIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRFDNQKIMFPNSVLATKAIHNYYRSPDMGDALEFFIHVTTPAENVALLKQRIASYVDNKKEHWYPSPTIVFKDHESLNMIRVAVWPTHRMNFQDMAERFLRRSLLIEEMVKIFKDLDIQYRLLPIDINIRTMPTTSDRLPPSWSTITS 826
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0006 826 MobiDBLite consensus disorder prediction 93 144 - -
Lal21g0006 826 Pfam Mechanosensitive ion channel 593 794 IPR006685 GO:0016020|GO:0055085
Lal21g0006 826 MobiDBLite consensus disorder prediction 95 125 - -
Lal21g0006 826 PIRSF Memb_At2g17000 3 826 IPR016688 -
Lal21g0006 826 MobiDBLite consensus disorder prediction 60 75 - -
Lal21g0006 826 Gene3D - 651 700 IPR023408 -
Lal21g0006 826 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 142 815 IPR016688 -
Lal21g0006 826 SUPERFAMILY Sm-like ribonucleoproteins 641 700 IPR010920 -
Lal21g0006 826 MobiDBLite consensus disorder prediction 47 75 - -
Lal21g0006 826 MobiDBLite consensus disorder prediction 1 29 - -
Lal21g0006 826 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 142 815 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal21g0006 Lal-Chr21 121633 124769 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0006 80 826 Mechanosensitive Ion Channel Family AT1G78610 60.230 0.0 870
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0006 K22048 - gmx:102665658 1024.62