Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1283 ATGCGTAAAGTTTCATCCCTTAATGTGATGTTTACGAGCTTGAATTCACCTTCGAAATTGAGTGGTTGGAAATCAAGTGGAGGCGATCCTTGTGGCGACTCATGGGAAGGGATCACGTGTGATGGCTCATCTGTCACAGAAATTAATTTATCTAATATGGGACTTACTGGTTCAATGGGCTACCAGCTTTCAACCTTAACATCAGTTACCCTCTTTGATTTGAGTAACAACAACTTCAAGGGTGATATACCGTATCAACTTCCTCCAAATGTTCGTCATATAAGCCTCGCGCATAATAAGCTCAATAACCAGCTCGGTGATATGTTTGCCAAACTCAATAAACTCAAAGAATTGGATGTATCAGACAATTCACTATCAGGAGACCTGCCCCAGAGTCTTAAATCGCTTTCAAGCCTCAAGAAGTTACATTTGGAAAACAATCAATTCTCTGGTTCAATAAATGTCCTTACCAAACTTCCACTTGAAGAATTGAATGTGGAGAACAACAAATTTACTGGTTGGGTCCCTGAGGAGTTAAAAGAAATAGATAGTTTGCAAACTGGAGGAAACTCATGGTCAAAAGGGCCAGCACCACCACCTCCTAATGGTACACCACCTTTCAAGCATTCCGAGAAAGAGAAGAATACTAATAAGTCAGTTGCTAGGGGAATAGCTATAGCAGGCATAGCTATTGGTGTACTGATAGTGATTATAATTATTGCTGCTTTAATTAAAAGAAGGTCACCTTCACCTTCTTCAAATTTCATTGATGAAGAGACGCATAGCCACCGGCATAGATCTTTTACACCGCTTGCATCTCAAGAGTTAACCAAAGATGATTCTGGTTCTGATGCCGTGAACAAAGAATACAAAGGATTTAAGTCATTGGAGTCAACTACAATTGACATGAAGGCATTGCAAAAAAATCCATCAGTTGGTGTGAGATCATCAGTCTCAGATTGTGTGCAATCCTTTAATGATAATGAGTTTGCAAAACGTCTAAACTCTAAAAGAAGTACCTCAGTCCGTTGTACTCCTTTTTCATTGGCAGAGTTACAGACTGCAACTGCTAATTTTGCTTCAGGTCGACTTCTTGGTGAGGGATCCATAGGATGTGTTTATCGTGCCAAATATGTTGATGGAAAGGTATTGGCTGTGAAAAAAATCAACCCTTCACTTTTAGATGGTGGACATCCTGAAGAATTCTCTCAACTAGTATCAAATATGGGAAAACTTCACCATCCAAATATTTCTGAACTAGTGGGTTATTGTTCAGAACAGCAGGAGCACATAAATGGTTCTCTGCATGATTTCTTACACTTATCCGATGACTTCAGCAAACCACTTACTTGGAACACCAGAGTCAGAATTGCACTCGGAACAGCTCGGGCTGTTGAGTACCTACATGAAACATGTTCTCCATCAGTAACTCACAAGAATATAAAGTCACCGAATATATTGTTAGACATGGATCTGAATCCCTGTCTCTCAGACTATGGTTTGGCATCATTCCACCATCGTACAAGTCAAAATCTAGGGGCAGGATATAATGCACCAGAATGCACAAAACCATCAGCATATACACTAAAGAGTGATGTATACAGTTTTGGAGTAGTGATGTTGGAACTATTGACAGGTCGAATGCCTTTAGACACTTCAAAGCCAAAAGCAGAACAATGTCTAGTTCGTTGGGCAACACCACAGCTTCATGACATTAATGCAGTTGAAAAAATGGTGGACCCTGCCCTTAGGGGACTTTACCCTCCTAAGTCACTCTTTCGATTTGCAGATATCATTGCACTCTGTGTACAGTCTGAGCCCGAATTTCGGCCACCGGTGTCAGAGGTGGTTCAGGCTTTGGTGCGATTAGTTCAGCGTTCAAGTATGAAAATGAGAGATGATCTTACCACTTCTGGTTATGATGACTGA 1929 0.4069 MRKVSSLNVMFTSLNSPSKLSGWKSSGGDPCGDSWEGITCDGSSVTEINLSNMGLTGSMGYQLSTLTSVTLFDLSNNNFKGDIPYQLPPNVRHISLAHNKLNNQLGDMFAKLNKLKELDVSDNSLSGDLPQSLKSLSSLKKLHLENNQFSGSINVLTKLPLEELNVENNKFTGWVPEELKEIDSLQTGGNSWSKGPAPPPPNGTPPFKHSEKEKNTNKSVARGIAIAGIAIGVLIVIIIIAALIKRRSPSPSSNFIDEETHSHRHRSFTPLASQELTKDDSGSDAVNKEYKGFKSLESTTIDMKALQKNPSVGVRSSVSDCVQSFNDNEFAKRLNSKRSTSVRCTPFSLAELQTATANFASGRLLGEGSIGCVYRAKYVDGKVLAVKKINPSLLDGGHPEEFSQLVSNMGKLHHPNISELVGYCSEQQEHINGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHETCSPSVTHKNIKSPNILLDMDLNPCLSDYGLASFHHRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRMPLDTSKPKAEQCLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIIALCVQSEPEFRPPVSEVVQALVRLVQRSSMKMRDDLTTSGYDD 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1283 642 MobiDBLite consensus disorder prediction 186 215 - -
Lal20g1283 642 PANTHER OS01G0253100 PROTEIN 3 104 IPR045271 GO:0004714|GO:0006468
Lal20g1283 642 PANTHER OS01G0253100 PROTEIN 105 638 IPR045271 GO:0004714|GO:0006468
Lal20g1283 642 Coils Coil 98 118 - -
Lal20g1283 642 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 3 104 - -
Lal20g1283 642 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 105 638 - -
Lal20g1283 642 MobiDBLite consensus disorder prediction 249 284 - -
Lal20g1283 642 Pfam Leucine rich repeat N-terminal domain 6 41 IPR013210 -
Lal20g1283 642 Pfam Leucine rich repeat 89 149 IPR001611 GO:0005515
Lal20g1283 642 SUPERFAMILY L domain-like 17 186 - -
Lal20g1283 642 ProSiteProfiles Protein kinase domain profile. 359 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1283 642 SUPERFAMILY Protein kinase-like (PK-like) 338 620 IPR011009 -
Lal20g1283 642 Gene3D Ribonuclease Inhibitor 90 198 IPR032675 -
Lal20g1283 642 Gene3D Ribonuclease Inhibitor 5 89 IPR032675 -
Lal20g1283 642 Pfam Protein tyrosine and serine/threonine kinase 362 620 IPR001245 GO:0004672|GO:0006468
Lal20g1283 642 Gene3D Phosphorylase Kinase; domain 1 319 431 - -
Lal20g1283 642 Gene3D Transferase(Phosphotransferase) domain 1 432 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1283 Lal-Chr20 17282504 17286305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1283 2 642 Strubbelig Receptor Gene Family AT1G78980 59.292 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lal20g1283 PK_Tyr_Ser-Thr 8.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1283 - - mtr:MTR_4g005130 937.562