Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1279 ATGGGAAGAGTAGAATTGAATGGGAATGGGAATGGGAATAATAGGAATGGGAATGGTGAGGGTCTCCGGCAATACTATTCCCTTCACATCCATGAGCTTCAACTCCTTCTCCGTCAAAAGACTCACAACCTCAATCGTCTCCAGGCTCAGCGTAATGATCTCAATTCAAGAGTGAGGATGCTTCGCGAAGAACTCCAGCTTCTTCAGGAGCCTGGATCATATGTCGGTGAAGTTGTCAAAGTTATGGGGAAGAACAAAGTCTTAGTCAAGGTTCACCCAGAAGGAAAGTATGTCGTCGATATTGATAAAAATATTGATATTACAAAGATTATTCCATCAACTAGAGTTGCACTCCGCAATGACAGCTATGTGCTTCATTTGATTCTCCCAAGCAAAGTTGATCCACTCGTCAATCTCATGAAAGTTGAAAAGGTTCCTGATTCTACATATGACATGATTGGTGGTTTGGACCAGCAAATCAAAGAAATCAAAGAGGTCATTGAGCTACCAATTAAACATCCTGAACTCTTTGAAAGTCTTGGTATAGCTCAGCCAAAGGGTGTCTTGCTTTATGGCCCACCTGGTACCGGAAAAACACTCTTGGCTAGGGCAGTGGCACATCACACTGACTGTACTTTCATCAGGGTCTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCCAGAATGGTCAGGGAACTTTTCGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGATGAGATTGACAGTATTGGATCCGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTGCAGCGCACTATGCTGGAGCTTCTCAACCAGTTAGATGGATTTGAAGCTTCAAATAAGATTAAGGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTCGACCTGGACGTATTGACCGGAAGATTGAATTCCCAAATCCTAACGAAGATTCTCGGCTGGATATTTTGAAAATCCATTCTAGAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCCGGTGCTGAGCTTAAGGCGGTGTGCACAGAAGCTGGAATGTTTGCTTTGAGGGAGAGGAGGGTGCATGTGACACAAGAAGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGGAAACTGAGAAAAACATGTCATTGCGGAAGTTGTGGAAGTAA 1230 0.4341 MGRVELNGNGNGNNRNGNGEGLRQYYSLHIHELQLLLRQKTHNLNRLQAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKIIPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEDSRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1279 409 Pfam Proteasomal ATPase OB C-terminal domain 75 130 IPR032501 -
Lal20g1279 409 Gene3D - 36 140 IPR012340 -
Lal20g1279 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 398 IPR027417 -
Lal20g1279 409 Gene3D - 327 404 - -
Lal20g1279 409 PANTHER BNAA02G04630D PROTEIN 18 406 IPR035261 GO:0036402
Lal20g1279 409 Pfam AAA+ lid domain 345 387 IPR041569 -
Lal20g1279 409 Pfam ATPase family associated with various cellular activities (AAA) 188 321 IPR003959 GO:0005524|GO:0016887
Lal20g1279 409 Coils Coil 30 64 - -
Lal20g1279 409 Gene3D - 141 322 IPR027417 -
Lal20g1279 409 SMART AAA_5 184 324 IPR003593 -
Lal20g1279 409 ProSitePatterns AAA-protein family signature. 292 310 IPR003960 GO:0005524|GO:0016887
Lal20g1279 409 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 18 406 - -
Lal20g1279 409 CDD AAA 154 321 - -
Lal20g1279 409 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 32 394 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1279 Lal-Chr20 17257865 17261292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1279 149 405 Miscellaneous Gene Families AT5G58870 40.541 1.32e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1279 K03066 - gmx:100812783 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1279 20 17257865 17261292 Lal1g1179 1 13037703 13041253 LSH
Lal20g1279 20 17257865 17261292 Lal18g0309 18 2551262 2555699 LSH