Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1278 ATGAAGGATAAGGATAAGGAAAAAGAGATATCGGAGAAGAAGAAATACCCGATCGGAGCAGAGCATTACGTTATCTATGAGGAGATTGGACAAGGTGTCAGTGCTTCCGTTCATCGTGCTCTCTGTATCCCTTTCCATGAAGTCATCGCTATCAAAATCCTTGACTTCGAACGTGACAATTGCGATCTCAATAATGTATCTCGTGAAGCTCAAACAATGATCCTGGTGGATCACCCTAATGTGTTGAAATCACACTGTTCATTTGTGAGTGATCATAATCTGTGGGTTGTGATGCCATTCATGTCGGGTGGTTCATGTCTCCATATACTCAAAGCTGCACATCCTGATGGTTTTGAAGAGCTTGTGATTGCAACAATACTCAGAGAAGTATTAAAAGGATTGGAATACCTTCATCATCATGGTCATATCCACCGTGATGTCAAGGCTGGCAATATTCTCATTGATTCACGTGGCAGTATTAAGCTTGGCGATTTCGGTGTCTCTGCTTGCCTTTTCGATTCTGGTGATAGGCAACGCACCAGGAATACTTTTGTTGGAACACCTTGTTGGATGGCACCTGAGGTCATGGAGCAACTGCATGGTTATAACTTCAAGTCTGTTCAATACTTATCTTCATTTATCTATAATACTCCATCTTATATTATTATATATTCACACTTCAAACTCTTCCTTTCTTCCAGAGCCGACATCTGGTCATTTGGTATAACTGCATTGGAACTTGCCCATGGTCATGCTCCTTTCTCTAAGTTTCCACCAATGAAGGTACTGCTTATGACTTTGCAAAATGCACCCCCTGGCCTTGATTATGAAAGAGATAGGAAATTCTCTAAGTCCTTTAAGCAGATGATTGCTAGTTGCTTAGTCAAAGATCCTACAAAACGACCCTCAGCAAGCAAGTTGCTAAAACATCCCTTCTTTAGGCAGGCTCGCTCCAATGATTATATTGCACGTACACTTTTGGAGGGGCTGCCTGCTTTAGGTGATCGCATGGAGGCCCTAAAGAGAAAAGAAGAAGATATGCTTGCACAAAAGAAAATGCCTGATGGGAAGATGGAGGAATTATCACAGAATGAATACAAACGAGGAATTAGTGGCTGGAACTTCAACCTTGAAGACATGAAGGCTCAGGCTTCCTTGATCCAGGAGTTTGACGATGCAATATCAGATATAAGTCATGTAGGAAGTTCATGTTCTTTATCAATGCTTGATGGAAATGAGAGGCAATTACCAAATGCAATTCATACCCCTTCACAGTCTGTTGATATGGACGATAAGGATCATCAGATTCAAAACCAGCCAGCTTCTGCTCCAGTAGTTGTTTCCTCAGTGAATGATGTCAAGACTGGAATTGAAAAATCAGATGATGACTCTAGCATGGCCAGTTCAAGCCATGAACAGCAATTTTCACAAACTTCTTCATCCTGTCTTGATGATCACTCGGACCATAATTTGGGCGAAAAACCTGATATAGAAAATGGCGGAAGATCTATTGAAAACATGGCTACCTCTTCTTCTCAGCATCAAAGAAGATGTTCATCAAGCATCTTACCTGAAGTTACTCTTCCACCTATTCGGGCAGAAAGTGAGAAGGTAAGAAATCTTCCCCTGAACATTTCAAATGGTGATGCAACTTCAGTTCCACAGATTGGAGAGGATGTGCTTACTGAACTTCCTTCTAAAGTCTCAAAATCATCAGCAGCTAATTCTGATGATACTGATGAGAAAGCAAAGGTACCAGTTGTTCAACAGAGAGGACGTTTTAAGGTTACATCTGAGAATGTTGACCCTGACAAGGTGGCCCCTTCTGTACTGCAAAAAAGTCACAGCATGCAGGTTGGTGGTTTTGAGGTTATTAGCCAGCATAATGCAGCTCCTCTACCCACAACTTTACCATTATTATCAACACCTGATGCTATATCATCAAGTCTTTCCGGCTGTTCTTACTCTCTTTTCCCCGTGTTGCACTCTGTGCTGCAGACAAATATTCAACAAAGGGAGACTATTTTAAGTTTAATGAAGCAAATTACTGCTGGTGACCCTCCAGTTATCGACCATGCAGCTGATGGTAGTTGTACCCTAGCACAAATAGCAGCAATTGAGAAATCCTCGCTTGAAGCAGCTCACGATAGGGAGAAAGAGTTACTTCATGAGATAACCGAGTTGCAGTGGAGGCTCGTATGTACCCAGGAAGAGCTTCAGAAATTGAAAACAGAAAACGCTCAGGTTAGTATGATTGTCGTGTGGAAATGGATACTTGGATTGGGTTTCCAGAAGTTATTTCCTGTATGGTTGGATTTACTTACTTAA 2328 0.4162 MKDKDKEKEISEKKKYPIGAEHYVIYEEIGQGVSASVHRALCIPFHEVIAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSDHNLWVVMPFMSGGSCLHILKAAHPDGFEELVIATILREVLKGLEYLHHHGHIHRDVKAGNILIDSRGSIKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKSVQYLSSFIYNTPSYIIIYSHFKLFLSSRADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPTKRPSASKLLKHPFFRQARSNDYIARTLLEGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLEDMKAQASLIQEFDDAISDISHVGSSCSLSMLDGNERQLPNAIHTPSQSVDMDDKDHQIQNQPASAPVVVSSVNDVKTGIEKSDDDSSMASSSHEQQFSQTSSSCLDDHSDHNLGEKPDIENGGRSIENMATSSSQHQRRCSSSILPEVTLPPIRAESEKVRNLPLNISNGDATSVPQIGEDVLTELPSKVSKSSAANSDDTDEKAKVPVVQQRGRFKVTSENVDPDKVAPSVLQKSHSMQVGGFEVISQHNAAPLPTTLPLLSTPDAISSSLSGCSYSLFPVLHSVLQTNIQQRETILSLMKQITAGDPPVIDHAADGSCTLAQIAAIEKSSLEAAHDREKELLHEITELQWRLVCTQEELQKLKTENAQVSMIVVWKWILGLGFQKLFPVWLDLLT 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1278 775 MobiDBLite consensus disorder prediction 503 522 - -
Lal20g1278 775 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lal20g1278 775 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 12 748 - -
Lal20g1278 775 Gene3D Transferase(Phosphotransferase) domain 1 104 366 - -
Lal20g1278 775 MobiDBLite consensus disorder prediction 416 523 - -
Lal20g1278 775 SMART serkin_6 23 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1278 775 Pfam Protein tyrosine and serine/threonine kinase 25 309 IPR001245 GO:0004672|GO:0006468
Lal20g1278 775 MobiDBLite consensus disorder prediction 467 485 - -
Lal20g1278 775 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 12 748 - -
Lal20g1278 775 Coils Coil 725 745 - -
Lal20g1278 775 ProSiteProfiles Protein kinase domain profile. 23 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1278 775 MobiDBLite consensus disorder prediction 486 500 - -
Lal20g1278 775 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Lal20g1278 775 SUPERFAMILY Protein kinase-like (PK-like) 21 314 IPR011009 -
Lal20g1278 775 MobiDBLite consensus disorder prediction 564 584 - -
Lal20g1278 775 CDD STKc_OSR1_SPAK 21 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1278 Lal-Chr20 17237909 17251075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1278 12 731 MAP Kinase Kinase Kinase Kinase AT1G79640 60.193 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lal20g1278 PK_Tyr_Ser-Thr 2.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1278 K08835 - gmx:100780339 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1278 20 17237909 17251075 Lal20g1278 20 17237909 17251075 ECH