Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1277 ATGGCTATTGATAATGAAACAATAAAGCAACAAACAAAGGATATCATATTCAGGTCCAGGCTTCCTGATATCTACATCCCCAATCACCTTCCCTTACATTCATATTGCTTTGAGAATCTCTCAAAGTTTGGAACAAAACCATGCTTGATTAATGCTCCAACTGGTGAAATCTACACCTACTATGATGTAGAGCTCAATGCAAGAAAAGTTGCCTCAGGCCTTAACAAATTAGGCATCCAACAAGGTGATGTTATCATGCTTCTCCTCCCAAATTGTCCACAATTTGTGTTTGCTTTCCTTGGTGCTTCTTTTAGAGGTGCTATTACCACTGCTGCCAACCCCTTTTTTACTCAAACTGAGATTTCTAAACAAGCAAAAGCTTCCAATGCCAAGTTGCTTATAACACAAGGTAGCTACTATGAGAAAGTGAAGGATTTGTTGGATGTGAAGTTCATGTTTGTGGATTCACCTCCACTAGTAGAACAAGGGCATCTACATTTCTCTCAGCTGCTTGAGGCTGATGAGAATGAAATGCCACAAGTGAAGATCAACCCTGATGATGTGGTCACATTGCCCTATTCCTCAGGCACAACGGGGTTGCCAAAAGGGGTGATGCTGACACACAAGGGTTTGGTGACTAGCATAGGACAACAAGTGGATGGAGACAACCCAAACCTTTACTTTCACTCTGAGGATGTTATACTATGTGTGCTTCCTTTGTTTCACATATATTCCCTCAACTCTGTGTTTCTATGTGGGTTGAGAGCCAAAGCTGCAATTTTGTTAATGCCAAAATTTGACATAAAATCCTTATTTGGACTTATTGAGAAACACAGAGTTAGTATTGCCCCAGTTGTGCCACCCATTGTGTTGGCCATTGCCAAGTCACCAGATATTGATAAGCATGATATATCTTCCATTAGGGTCTTGAAATCTGGTGGAGCCCCCCTTGCCAATGAACTTGAACTAACTGTCAGGGCCAAATTCCCCAATGCCAAACTTGGACAGGGATATGGGATGACAGAGGCAGGTCCAGTATTAGCAATGTGCTTAACATTTGCTAAAGAAGCAATAGATGTAAAAGCAGGTTCATGTGGAAGCGTAGTTAGGAATGCAGAGATGAAAATTGTGGATCCTCAAACTGATAATTCTTTACCTCGTAATCAACCTGGTGAAATTTGTATTAGAGGCGACCAAATCATGAAAGGTTATCTAAATGATCCAGAGGCAACAAAGAGAACAATAGACAAAGAAGGATGGTTACACACAGGTGATATTGGATACATAGATGATGATGATGAATTATTCATAGTTGATAGGCTTAAGGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCTCTTCTTCTTTCTCATCCTAACATCTCTGATGTTGCTGTTGTCCCAATGAAGGATGAAGCTGCTGGAGAGGTCCCAGTTGCATTTGTTGTGAGATCAAATGCTGATATTGACACAACTGAGGATGAAATTAAGCACTTCATCTCAAAACAGGTGGTGTTTTATAAAAGAATAAATAGAGTATTCTTCATTGAAGCCATTCCCAAGTCACCCTCAGGCAAAATATTAAGAAAGGATCTAAGGGCTAAGCTTGCAACAGGGTTTCCAAATTCAACATAA 1653 0.4011 MAIDNETIKQQTKDIIFRSRLPDIYIPNHLPLHSYCFENLSKFGTKPCLINAPTGEIYTYYDVELNARKVASGLNKLGIQQGDVIMLLLPNCPQFVFAFLGASFRGAITTAANPFFTQTEISKQAKASNAKLLITQGSYYEKVKDLLDVKFMFVDSPPLVEQGHLHFSQLLEADENEMPQVKINPDDVVTLPYSSGTTGLPKGVMLTHKGLVTSIGQQVDGDNPNLYFHSEDVILCVLPLFHIYSLNSVFLCGLRAKAAILLMPKFDIKSLFGLIEKHRVSIAPVVPPIVLAIAKSPDIDKHDISSIRVLKSGGAPLANELELTVRAKFPNAKLGQGYGMTEAGPVLAMCLTFAKEAIDVKAGSCGSVVRNAEMKIVDPQTDNSLPRNQPGEICIRGDQIMKGYLNDPEATKRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPNISDVAVVPMKDEAAGEVPVAFVVRSNADIDTTEDEIKHFISKQVVFYKRINRVFFIEAIPKSPSGKILRKDLRAKLATGFPNST 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1277 550 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 11 544 - -
Lal20g1277 550 Pfam AMP-binding enzyme C-terminal domain 456 532 IPR025110 -
Lal20g1277 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 544 - -
Lal20g1277 550 CDD 4CL 26 538 - -
Lal20g1277 550 SUPERFAMILY Acetyl-CoA synthetase-like 14 544 - -
Lal20g1277 550 Gene3D - 9 441 IPR042099 -
Lal20g1277 550 Gene3D - 442 544 IPR045851 -
Lal20g1277 550 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Lal20g1277 550 Pfam AMP-binding enzyme 39 447 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1277 Lal-Chr20 17233718 17236326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1277 14 510 Monolignol Biosynthesis Gene Families AT1G51680 69.565 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1277 K01904 - jre:108998277 857.825