Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1276 ATGAGGCCCATTCAACCTCCACCCTCTTCCACCTCCTCCGCTCCTCCTCACCGTCCTCACCACCGCCGCCGTAAAGACCTCACCCTCCCTCTCCCCCACCGCAACACCAACCTCGCTGTCCCTCTCCCTCTCCCTCCCTCCTCCGCCCCTTCTTCCGCCCCTTCCTCCACCTCCCTCCACCATCACATCCCTTTCTCCGAGCTTGAACGCCTCAACCGTATCGGCAGCGGCAGCGGCGGCACAGTCTACAAGGCCATTCACCGTCCCACCAACCGACTCTACGCTCTCAAGGTCATCTACGGCCACCACGAGGAGTCCGTTCGCCGACAGATCCACCGTGAGATCCAGATCCTCCGCGACGTTGACGACCAGAACGTGGTGAAGTGTCACGACATGTACGATAACAACGCCGAGATCCAGGTCCTCCTTGAGTTCATGGATGGCGGTTCCCTCGAAGGGAAGCACATACCTAACGAGCAAAACCTCGCTGATCTTTCTCGTCAAATCCTTCGCGGCCTCTCCTACCTCCACCGCCGCCACATCGTCCACCGTGACATCAAGCCTTCCAACCTCCTCTTCAATTCCCGGAAGCAGGTAAAGATCGCTGACTTCGGCGTCGGTCGGATCTTGAACCAGACGATGGATCCGTGTAATTCTTCAGTGGGTACCATCGCTTATATGAGCCCTGAGAGGATCAACACTGACATCAACGATGGACAATATGATGCATACGCTGGTGATATATGGAGCTTTGGTGTTTCCATCTTGGAGTTCTATATGGGCAGATTCCCTTTTGCTGTTGGGAGGCAAGGTGATTGGGCTAGTTTGATGTGTGCTATCTGTATGGCTCCACCGCCGGAGGCACCCGTCACTGCCTCACCGGAGTTTAGGGATTTCGTCTCAAGGTGTTTGCAGAGGGAACCTTCTAGAAGGTGGAGTGCTTCCAGGTTATTGGGACATCCATTTATTGCACAAGATATTCTAAATCATGCTCAAGTTCATCAAAACCTTCATCAGCTCCTCCCTCCACCCAGGCCTCTTTCTTCTTAG 1050 0.5486 MRPIQPPPSSTSSAPPHRPHHRRRKDLTLPLPHRNTNLAVPLPLPPSSAPSSAPSSTSLHHHIPFSELERLNRIGSGSGGTVYKAIHRPTNRLYALKVIYGHHEESVRRQIHREIQILRDVDDQNVVKCHDMYDNNAEIQVLLEFMDGGSLEGKHIPNEQNLADLSRQILRGLSYLHRRHIVHRDIKPSNLLFNSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMAPPPEAPVTASPEFRDFVSRCLQREPSRRWSASRLLGHPFIAQDILNHAQVHQNLHQLLPPPRPLSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1276 349 Pfam Protein kinase domain 69 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1276 349 Gene3D Phosphorylase Kinase; domain 1 49 147 - -
Lal20g1276 349 Gene3D Transferase(Phosphotransferase) domain 1 152 341 - -
Lal20g1276 349 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Lal20g1276 349 SUPERFAMILY Protein kinase-like (PK-like) 65 344 IPR011009 -
Lal20g1276 349 ProSiteProfiles Protein kinase domain profile. 68 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1276 349 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 19 346 - -
Lal20g1276 349 SMART serkin_6 68 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1276 349 CDD PKc_MAPKK_plant_like 66 323 - -
Lal20g1276 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Lal20g1276 349 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 19 346 - -
Lal20g1276 349 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1276 Lal-Chr20 17229322 17230371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1276 1 339 MAP Kinase Kinase Gene Family AT1G51660 68.555 2.50e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lal20g1276 Pkinase 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1276 K13413 - gmx:100786390 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1276 20 17229322 17230371 Lal20g1276 20 17229322 17230371 ECH
Lal20g1276 20 17229322 17230371 Lal1g1184 1 13074780 13075814 LSH