Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1256 ATGCGTTCCGCAATACATAATGCGGACGCAACAATGCGGATGCGGTCGACAACGCATCGGCAGCGCACCACAATTGCGTATATTGGTGGTCAAAAGGAGAAGTTTGTAAGGTTGGATGAACTGGATTCTAATTTGTCATTGCCATCTAGCTCATCTGGGATGAAGAAATTAAGATTTAATTTAGATTGTCTTCCTTTTCGTCGTCGCGCAAAAAAGAACCCATCAAAATCGTTTAGGCAAGGAGTGAAGAGAGGATCAGATGGACTTGTAACATTCGGAAGATCACTCAGAAGTGGAGTCACTTGGTCAGTGTTTCCTGAAGATTTGAAAGTATCGGAGAGAAAAGTATTTGATCCTCAAGATAAGAACCTTTTGTATTGGAACAAGTTTTTTGAGCTTCTTTGCATTTTTTCTGTAGCTTGTGATCCTTTCTTGTTTTATCTTCCTTATTTCAACCACAAATCGTTTTGCCTCGCCATAGATAACAAGCTAGCAAGTTTCTCTGTTACGCTGCGAACAATATTCGATTGTATTTATCTCATCCGCATAAGTTTCCAATTCCGTACTGCTTTCATTGCGCCTTCATCTCGTGTATTTGGAAGAGGTGAACTTGTTATAGATCCTTCACAGATTGCCAAGAGATATCTACAACGTTACTTCATTGTTGACTTCATTTCTGTGCTGCCTATGCCACAGATTATAGTGTGGAAATATCTCTACAAAACTAGACGTGCCGAGGTTTTGGCCACAAAAACAGCACTGTTAAGACTTGTCATCCTGCAATATTTTCCAAGATTTCTACGATTTCTACCTTTAGCTTCAGAAGTCAAAAAAACAGCTGGTGTATTTTCTGAAAATGCACTTCTTGGTGCCATGTACTATTTGATTTGGTATATGCTTGCTAGTCATATAACGGGTTCGGTGTGGTACTTACTAGCCATAGAACGCAATGATACATGCTGGAAGCAAGCTTGTGAAGAAGTTGGAAATTGTAACATACATTTCTTGTACTGTGGAAGTTCTAACAGGCATATTCCAGGTACACTTGGTCAGGGGCTTCTAACAAGTACCTACCCTGGAGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGTCTTGTCCTTTTTTCTCTTCTCATTGGAAACATGCAGTTAAAGGCATTTGCATATATTTCTAAGCTTTGTGTTATCATTACTTTAGATGTTCATGTCACAATGAGGAAAATGACTTTAACAAATTTGCACAATAGTTCTAAGCTTTGTGTTATCATTGGAATTGGACAGACATACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAATAGGCGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCAGAGCTAAGGGAAAGAGTCAGAAAGTATGACCAATACAAGTGGCTGAATACCCGAGGAGTAGATGAAGAGAGCTTGGTTCAGAGTCTTCCGAAAGATCTCAGGAGAGATATTAAACGCCATCTTTGTTTGAATTTGGTCAGAAGGGTACCTCTCTTTGCTAACATGGATGAACGCTTGCTTGACGCTATATGTGAGAGATTGAAGCCTAGTTTGTATACTGAAGGCACTTACTTAGTTAGGGAAGGAGATCCAGTTAATGAGATGTTGTTCATCATTCGTGGTCGTCTCGAAAGTGTAACTACAGATGGTGGAAGAAGTGGTTTTTTCAACAGAGGTCTTCTAAAAGAAGGCGACTTCTGCGGTGAAGAGCTACTAACATGGGCACTTGACCCGAAATCCGCATCTAACTTGCCATCATCTACAAGGACAGTGAAGGCTATAAATGAAGTAGAGGCATTTGCATTGGAAGCAGAAGAGTTGAAGTTTGTTGCTTCACAGTTTAGGCACATTCATAGTAGACAGGTTCAGCACACTTTCCGTTTCTACTCGCAGCAGTGGAGAACATGGGCTGCAATCTTCATTCAAGCTGCGTGGAGGAGGCATACACGGAGGAAAGTCGCGGAACAGCGCAGGAAGGAGGAGGAAGAAGACTTATATGACTCGGATGATTATGATTCTGCAAGAGCCTTAGTTCCAAATAGCGAAGGTTCATCGTCAAGGAGGCTTGGACTTGGTTCAACCATCTATGCTTCCCGCTTTGCTGCTAATCTTCGTGGTCGTAATCTTCGGGTTTCAAGTTCTTCGGACTTAACAAAACTCCAGAAGCCTCCAGAACCTGACTTTAGTGCTCTTGAAGATTAA 2238 0.4138 MRSAIHNADATMRMRSTTHRQRTTIAYIGGQKEKFVRLDELDSNLSLPSSSSGMKKLRFNLDCLPFRRRAKKNPSKSFRQGVKRGSDGLVTFGRSLRSGVTWSVFPEDLKVSERKVFDPQDKNLLYWNKFFELLCIFSVACDPFLFYLPYFNHKSFCLAIDNKLASFSVTLRTIFDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPSQIAKRYLQRYFIVDFISVLPMPQIIVWKYLYKTRRAEVLATKTALLRLVILQYFPRFLRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKQACEEVGNCNIHFLYCGSSNRHIPGTLGQGLLTSTYPGEVLFSIVIAIMGLVLFSLLIGNMQLKAFAYISKLCVIITLDVHVTMRKMTLTNLHNSSKLCVIIGIGQTYLQSMSVRLEEMRINRRDSEQWMHHRLLPPELRERVRKYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSASNLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHTRRKVAEQRRKEEEEDLYDSDDYDSARALVPNSEGSSSRRLGLGSTIYASRFAANLRGRNLRVSSSSDLTKLQKPPEPDFSALED 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1256 745 Pfam Ion transport protein 126 384 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal20g1256 745 ProSiteProfiles IQ motif profile. 646 675 IPR000048 GO:0005515
Lal20g1256 745 Gene3D - 130 387 - -
Lal20g1256 745 Gene3D Jelly Rolls 508 628 IPR014710 -
Lal20g1256 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 348 386 - -
Lal20g1256 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 421 742 - -
Lal20g1256 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 29 347 - -
Lal20g1256 745 MobiDBLite consensus disorder prediction 724 745 - -
Lal20g1256 745 CDD CAP_ED 510 641 IPR000595 -
Lal20g1256 745 Pfam Cyclic nucleotide-binding domain 531 620 IPR000595 -
Lal20g1256 745 SMART cnmp_10 510 641 IPR000595 -
Lal20g1256 745 SUPERFAMILY Voltage-gated potassium channels 119 384 - -
Lal20g1256 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 421 742 - -
Lal20g1256 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 29 347 - -
Lal20g1256 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 348 386 - -
Lal20g1256 745 ProSiteProfiles cAMP/cGMP binding motif profile. 510 594 IPR000595 -
Lal20g1256 745 Gene3D Helix hairpin bin 437 501 - -
Lal20g1256 745 SUPERFAMILY cAMP-binding domain-like 440 630 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1256 Lal-Chr20 17070061 17075157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1256 27 742 Ion Channels AT1G15990 59.974 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1256 K05391 - gmx:100810453 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1256 20 17070061 17075157 Lal20g1256 20 17070061 17075157 ECH