Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1254 ATGTCTTTGAAGATAGGAGATGAAAGTTGGCAAAAAAGAGCATTAGTAGTGATAAGAGAGTATGATGAAGAGAGACACAAAGTGTCATTAGAGAAAATGGAGAAGCTTTGTGAAGTTGGTGAGAGAGGAAAACCATCCCTTGTTACTGACCTTATGGGAGACCCTATTTGCCGTATCCGTCACATTCCATTACATGTCATGCTGGTTGCAGAATACGGAGAAGAAGGACAAGTTATTGGAGTGATAAGAGGTTGTGTAAAAACAGTTACAAGAGGGAATTCAGTTTATGTAAAACTTGCTTATCTTTTGGGTCTCAGAGTCTCCCACCAACACAGGAGATTTGGAATCGGGACAAAACTAGTAGAACATTTAGAAGAGTGGTGCAAGCAAAAAGGGGCCAAATATGCATACATGGCAACTGATTGTACAAATGAACCTTCCATCAATTTGTTCACAAAAAAATGTTACTACTCAAAGTTCAGGACTCTAACCATGCTAGTGCAACCAGTTCATGCACATTACAAACCAATAAACTCAAATGTTGCTATTCTTCATCTTCCACCATCCCTAGCAACCTCCATATATAACCATATCTTTACTAATTCAGAATTTTTCCCTAGAGACATTGATTTAATTTTATCAAATAAGCTCAATTTGGGTACATTTATGGCCATACCAAAGAAGTACCTTTCAAAATGTGATCTAAAAAGGGGTATATACCCTCCAAGCTATTCAATATTAAGTGTGTGGAACACCAAAGAAGTGTTCAAATTACAAGTTAAAGGAGTGTCACCACTAGCACATGCATGTTGTGTAGGTACAAGGGTATTGGATGAATGGATGCCATGGCTAAGGGTACCCTCATACCCTGATGTTTTTAGGCCATTTGGGGTATATTTTCTATATGGATTACACATGGAGGGTAAGTATGGTAGACAACTCATGAAGTGTTTATGTGGATTTGTGCATAATATGGCTAGAGATGAGGGTGGTTGTGGGGCCATTGTGGCTGAATTGGGCCAAAGGGACCCAGTTAAAGATGCTGTCCCACATTGGAGGAAATTCTCTTGGGCTGAAGACATATGGTGTATTAAGAATCTTGAAAAATGTGGGTCATATGATTGCTTCACTTCTAGATCCTCTTCACCAGTAATATTTGTTGATCCTAGAGATTTTTGA 1179 0.3876 MSLKIGDESWQKRALVVIREYDEERHKVSLEKMEKLCEVGERGKPSLVTDLMGDPICRIRHIPLHVMLVAEYGEEGQVIGVIRGCVKTVTRGNSVYVKLAYLLGLRVSHQHRRFGIGTKLVEHLEEWCKQKGAKYAYMATDCTNEPSINLFTKKCYYSKFRTLTMLVQPVHAHYKPINSNVAILHLPPSLATSIYNHIFTNSEFFPRDIDLILSNKLNLGTFMAIPKKYLSKCDLKRGIYPPSYSILSVWNTKEVFKLQVKGVSPLAHACCVGTRVLDEWMPWLRVPSYPDVFRPFGVYFLYGLHMEGKYGRQLMKCLCGFVHNMARDEGGCGAIVAELGQRDPVKDAVPHWRKFSWAEDIWCIKNLEKCGSYDCFTSRSSSPVIFVDPRDF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1254 392 Pfam Acetyltransferase (GNAT) family 66 155 IPR000182 GO:0016407
Lal20g1254 392 PANTHER OS12G0561600 PROTEIN 10 392 - -
Lal20g1254 392 CDD NAT_SF 67 137 - -
Lal20g1254 392 PANTHER N-ACETYLTRANSFERASE 10 392 - -
Lal20g1254 392 Gene3D - 12 161 - -
Lal20g1254 392 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 16 187 IPR000182 GO:0016407
Lal20g1254 392 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 59 162 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1254 Lal-Chr20 17061319 17064274 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lal20g1254 Acetyltransf_1 5.8e-16 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1254 - - gmx:100799977 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1254 20 17061319 17064274 Lal20g1254 20 17061319 17064274 ECH
Lal20g1254 20 17061319 17064274 Lal18g0037 18 257518 260735 LSH