Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1252 ATGGATAGTGCATCATGGATTAACACTTCCTTGAATCTCAACATTAATTCCTACACAGTTCATCAACAAGTTAGTAAAAAGGTAGAAAGCAAATTATTCTCATTGGGGATGTCCAAGTTTCATGTGAAAGAAGAGTCCACTATTGAGTTGGAGATGGAATTGAAGAGGGCAAGTGCAGAAAACAAGAAACTAGTGGAAATGCTTTCAGTGGTGTGTGAGAACTACAACAGTTTGAAAAGCCACTTGATGGAATATATGAGCAAAAATCCTGAAAAACTCACTCCATCTTCAAAGAAAAGGAAGTGTGAAAGCAGCAACAAAAGTAGTAAGATAATGAGAATTAATAATGGCAATTCACAAAGCAGCTACAATGATGAAGAAGAAACCATTAGACCAAAAATTTCAAGAGTTTATGTCAGGACTGAAGCATCTGATACAAGCCTTATTGTGAAAGATGGATACCAATGGAGGAAGTATGGGCAAAAGGTGACAAGAGATAACCCATGTCCAAGAGCATACTTCAAATGTTCTTTTGCTCCAATCTGCCTTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGACCAATCTGTCCTAGTTGCAACTTATGAAGGGGAGCATAATCATCCTCATCCTTCTTAG 639 0.3772 MDSASWINTSLNLNINSYTVHQQVSKKVESKLFSLGMSKFHVKEESTIELEMELKRASAENKKLVEMLSVVCENYNSLKSHLMEYMSKNPEKLTPSSKKRKCESSNKSSKIMRINNGNSQSSYNDEEETIRPKISRVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPICLVKKKVQRSVDDQSVLVATYEGEHNHPHPS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1252 212 MobiDBLite consensus disorder prediction 93 107 - -
Lal20g1252 212 Gene3D WRKY domain 134 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal20g1252 212 MobiDBLite consensus disorder prediction 108 125 - -
Lal20g1252 212 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal20g1252 212 Coils Coil 47 67 - -
Lal20g1252 212 PANTHER TRANSCRIPTION FACTOR 1 210 - -
Lal20g1252 212 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal20g1252 212 MobiDBLite consensus disorder prediction 88 127 - -
Lal20g1252 212 Pfam WRKY DNA -binding domain 151 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal20g1252 212 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 210 IPR044810 GO:0003700
Lal20g1252 212 SUPERFAMILY WRKY DNA-binding domain 146 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1252 Lal-Chr20 17042907 17044689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1252 3 212 WRKY Transcription Factor Family AT1G80840 51.556 4.21e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal20g1252 WRKY 2.8e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1252 20 17042907 17044689 Lal20g1252 20 17042907 17044689 ECH
Lal20g1252 20 17042907 17044689 Lal18g0039 18 267023 268642 LSH