Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1251 ATGGATACACAACAAGAACACCAAGCTAGTAGTGTAATCTTCAACAAGTATGAGATGGGTCGTGTTCTTGGTCAAGGAAACTTTGCTAAAGTGTACTATGGAAGAAACATAGTAACCAATGAGAGTGTGGCGATAAAGGTGATAAAGAAGGAGAAGTTGAAGAAGGAGAGGCTAGTGAAGCAGATAAAGCGTGAAGTTTCTGTCATGAGGCTTGTGAAACATCCTCACATAGTTGAATTGAAAGAAGTTATGGCAACAAAAACTAAGATTTTCTTGGTAATGGAATATGTAAAAGGTGGTGAACTTTTCACTAAAGTTAACAAAGGAAAACTCAAAGAAGAAGTTGCAAGAAAGTACTTTCAACAACTCATAAGTGCAGTTGATTTTTGTCATAGCCGCGGCGTAACACACCGTGATTTGAAGCCTGAAAACTTGCTCTTAGATGAGAATGAAGATCTCAAAGTTTCAGACTTTGGTCTCTCTGCTTTGCCAGAACAAAAGCGTTCAGATGGGTTATTGTTAACACCTTGTGGAACACCAGCTTATGTTGCACCTGAAGTGTTGAAGAAAAAAGGGTATGATGGTTCAAAAGCTGATATTTGGTCTTGTGGGGTTATTCTATATGCTTTGATTTGTGGCTATTTACCCTTTGAAGGTGAGAATGTTATGAGAATTTATAGAAAGTCTTTTAGAGCTCAATATGAGTTACCTGATTGGGTTTCAAATGAAGCTAAGAACTTGATTTCTAATCTACTTGTTGCTAATCCTGAGAAGAGGTATTCAATCATTGATATTATGAATGATCCCTGCTTTCAAATTGGGTTCATTAGACCTATTGCTTTTTCAATGAAGGAATCATCTTTTGAAGGTGAAATTGATTTCAATGATGATGATCATCTTGATGATAATGAAGTGGAAAAACCTGCTAGACCATTTTACAATGCATTTGAGATCATTTCATCATTGTCTCATGGTTTTGATCTTAGGAACTTGTTTGAGACAAGGAAGAGGTCACCATCTATGTTTATTTCAAAGTTTTCAGCTTTGGCAGTGTTGGCAAAGCTCGAGGCCGTGGCGAAGAAGTTGAATTTTCGGGTGACTGGGAAGAAGGAATTCATGGTGAGGATGCAGGGGAATAGAGAGGGGAGGAAAGGGAAGCTGGCAATGACGGTCGAAGTCTTCGAGGTCGCGCCGGAGGTGGCAGTGGTGGAGTTTAATATGTCTTCAGGTGACACATTTGAGTACATCAAGTTCTGTGAGGAGGAAGTAAGACCTTCCCTCAAAGACATTGTTTGGACTTGGCAAGGTGGTGATAGTAACAATCATTGCCAACAATAA 1338 0.3909 MDTQQEHQASSVIFNKYEMGRVLGQGNFAKVYYGRNIVTNESVAIKVIKKEKLKKERLVKQIKREVSVMRLVKHPHIVELKEVMATKTKIFLVMEYVKGGELFTKVNKGKLKEEVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQKRSDGLLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALICGYLPFEGENVMRIYRKSFRAQYELPDWVSNEAKNLISNLLVANPEKRYSIIDIMNDPCFQIGFIRPIAFSMKESSFEGEIDFNDDDHLDDNEVEKPARPFYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSALAVLAKLEAVAKKLNFRVTGKKEFMVRMQGNREGRKGKLAMTVEVFEVAPEVAVVEFNMSSGDTFEYIKFCEEEVRPSLKDIVWTWQGGDSNNHCQQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1251 445 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1251 445 Gene3D Kinase associated domain 1, KA1 315 433 - -
Lal20g1251 445 SUPERFAMILY Protein kinase-like (PK-like) 13 272 IPR011009 -
Lal20g1251 445 PANTHER - 9 442 - -
Lal20g1251 445 Gene3D Transferase(Phosphotransferase) domain 1 8 314 - -
Lal20g1251 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Lal20g1251 445 CDD CIPK_C 314 428 - -
Lal20g1251 445 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1251 445 PANTHER CBL-INTERACTING PROTEIN KINASE 16 9 442 - -
Lal20g1251 445 Coils Coil 45 65 - -
Lal20g1251 445 Pfam NAF domain 312 367 IPR004041 GO:0007165
Lal20g1251 445 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Lal20g1251 445 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1251 445 ProSiteProfiles NAF domain profile. 308 333 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1251 Lal-Chr20 17034090 17035427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1251 4 442 CBL-interacting serine-threonine protein kinases AT5G25110 60.544 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal20g1251 Pkinase 5.6e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1251 - - gmx:100812424 679.478