Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1249 ATGCAATTGGGTATTCAAAATCGATGGAAAGATTGGAACTTGATGCGAGGAAATGAAGGAGGGAGAAGGAAGAGATTTGTGGGGAAGGATAACTTGTTTTTTTTAAATCAATCAGCAAGCAAAATGTCAGGTGATGAAGGTGCTGTTGCAACTGAGCCGGCTGCTGCTCCTGCTTCAGTCATTCCCGGGGAGCCTATGGACATCTTGACCGCATTACAGCTTGTGCTCAGAAAATCATTGGCTTATGGTGGTCTTGCCCGAGGCCTTCATGAAGCCGCGAAGGTGATCGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCCGAAGACTGTGACCAGCCTGACTATGTGAAACTTGTCAAGGCCCTCTGTGCTGAGCACAATGTTAGCCTCTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCTGAGGGAAAAGCTAGAAAGGTAACTGGCTGCTCATGCGTGGTTGTCAAGGATTTCGGGGAGGAACACGAAGCCTACAATGTTGTTCTGCAGCATGTTAAATCTAACTGA 558 0.4749 MQLGIQNRWKDWNLMRGNEGGRRKRFVGKDNLFFLNQSASKMSGDEGAVATEPAAAPASVIPGEPMDILTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1249 185 PANTHER 40S RIBOSOMAL PROTEIN S12 42 185 - -
Lal20g1249 185 ProSitePatterns Ribosomal protein S12e signature. 71 89 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal20g1249 185 PANTHER 40S RIBOSOMAL PROTEIN S12 42 185 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal20g1249 185 PRINTS Ribosomal protein S12E family signature 75 88 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal20g1249 185 PRINTS Ribosomal protein S12E family signature 89 105 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal20g1249 185 PRINTS Ribosomal protein S12E family signature 130 151 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal20g1249 185 PRINTS Ribosomal protein S12E family signature 155 168 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal20g1249 185 SUPERFAMILY L30e-like 65 183 IPR029064 -
Lal20g1249 185 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 71 164 IPR004038 -
Lal20g1249 185 Gene3D - 53 185 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1249 Lal-Chr20 17009934 17013233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1249 42 185 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 68.056 1.72e-66 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1249 K02951 - gmx:100786733 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1249 20 17009934 17013233 Lal1g1217 1 13418710 13421110 LSH
Lal20g1249 20 17009934 17013233 Lal18g0043 18 314818 317270 LSH