Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1246 ATGCAAGACAATGAGGAAATTCCTTCAACACCTGCTACACCAGGTACACCTGGTGCTCCTCTTTTTGGTGGGTTCAAATCTGAGAGAAATATTAATAATAATAATAGTATTGCTAAGAAATCACTCCTCAAGAATTTCAAATGTTTTAATGTTGAAGATTTGGACTTAGAAGATGGTGCTTTACCTAAAGTCTCTTGCTCTTTGCCTCCCCCTCCAGTCCCTCTTGCAAGAAAGGTAGGAGCTGAGTTTATAGGGACATTCATTCTAATGTTTGTTGGAACAGCAGCAGCTATAGTGAACCAAAAAACAAATGGTTCAGAGACATTGATTGGTTGTGCTGCTACAACAGGTCTTGCTGTTATGGTCATTATCCTTTCCACTGGTCACATCTCTGGTGCTCATCTTAACCCTGCTGTCACTATTTCCTTTGCTGCATTGAAGCACTTCCCTTGGAAGAATGTACCTACATATATTGGTGCACAAGTATTGGCATCAATATGTGCAGCATTTGCACTGAAAGGGATATATCATCCCTTCATGAATGGTGGAGTCACTATTCCAACAGTGGGATATGTTCAAGCTTTTGCCTTAGAATTCATTATCAGTTTTAATCTCATGTTCGTTGTCACTGCAGTTGCTACCGACACTAGAGCTGTTGGAGAGCTTGCGGGAATAGCGGTGGGGGCCACTGTAATGCTGAATATACTCATAGCTGGGCCAGCAACAGGAGGGTCAATGAATCCAGTAAGAACACTTGGGCCAGCAATTGCAACAAAGAACTACAAAGCCATTTGGGTTTATCTCATTGCTCCTATATTTGGTGCTCTTTGTGGGGCAGGTTCCTACACTCTTGTCAAGCTTCCTGATGAAGATGTAAACCCTCAATCTAAGGTCCCTTCAAATCCGGGCAGCTTTAGAAGGTGA 924 0.4242 MQDNEEIPSTPATPGTPGAPLFGGFKSERNINNNNSIAKKSLLKNFKCFNVEDLDLEDGALPKVSCSLPPPPVPLARKVGAEFIGTFILMFVGTAAAIVNQKTNGSETLIGCAATTGLAVMVIILSTGHISGAHLNPAVTISFAALKHFPWKNVPTYIGAQVLASICAAFALKGIYHPFMNGGVTIPTVGYVQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIATKNYKAIWVYLIAPIFGALCGAGSYTLVKLPDEDVNPQSKVPSNPGSFRR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1246 307 MobiDBLite consensus disorder prediction 1 24 - -
Lal20g1246 307 SUPERFAMILY Aquaporin-like 74 293 IPR023271 -
Lal20g1246 307 CDD MIP 77 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Lal20g1246 307 PANTHER AQUAPORIN NIP2-1 6 295 IPR034294 -
Lal20g1246 307 Pfam Major intrinsic protein 75 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 PANTHER BNAA02G36290D PROTEIN 6 295 - -
Lal20g1246 307 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal20g1246 307 Gene3D Glycerol uptake facilitator protein. 72 297 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1246 Lal-Chr20 16980232 16985575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1246 2 307 Major Intrinsic Protein MIP AT1G80760 73.955 1.12e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1246 K09874 - gmx:100815637 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1246 20 16980232 16985575 Lal1g1220 1 13451958 13460951 LSH