Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1244 ATGGAAGATCAAAAACACTCATATGACTCAACTCCTCATATTCTACTAGAGCTAAGTCTCTCTAGCAAGGATTCCTGTAATGACTCAAAGCCAGAACTTAACCTCCTCAATTCTTTCCATACAAATTTATCTGAAAACCCTTTAGAATATAGTCATTGCAATGAACAAGAGCCAAGGACTTTTTCATGCAACTATTGCCAAAGAAAGTTTTATAGTTCACAGGCACTTGGAGGACACCAAAATGCGCATAAGCGCGAAAGAAATTTCGCAAGAAGAGGATATAGAAATGGTGCTGCTGCAGTTTCAGTAGATTTTGGACACAGTTACTCCAGCATGGCTTCTATGCCTTCACATGCCTTGTATAACAAACCTCTTGGAATTCAAGTGCATTCTATGATCAACAAAACTTCTTATCAAACACCCTTTTTTGGGTGGAAGAGGCATGTTTTGGATTCACAATCAGCAATTGGTAAGTTTACATATGGAAATTTTCATGTTGGAACAGAAACTGTGTCATCCTTTGCTAGTGCTATTCCAAGGCTAGAGAATTTTTCTAATAGGCTGGTGAGTGAAGGATTTGGAGGTTGGTTTGGCAGCATTACCTATTTAAAGTCTAAACAAGAGAAGTTGCAGCAAAAGCTTGACTTGTCCCTTAAGCTCTAA 663 0.3846 MEDQKHSYDSTPHILLELSLSSKDSCNDSKPELNLLNSFHTNLSENPLEYSHCNEQEPRTFSCNYCQRKFYSSQALGGHQNAHKRERNFARRGYRNGAAAVSVDFGHSYSSMASMPSHALYNKPLGIQVHSMINKTSYQTPFFGWKRHVLDSQSAIGKFTYGNFHVGTETVSSFASAIPRLENFSNRLVSEGFGGWFGSITYLKSKQEKLQQKLDLSLKL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1244 220 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 220 IPR044246 GO:0009788
Lal20g1244 220 SUPERFAMILY beta-beta-alpha zinc fingers 58 89 IPR036236 -
Lal20g1244 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lal20g1244 220 Gene3D Classic Zinc Finger 38 105 - -
Lal20g1244 220 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lal20g1244 220 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1244 Lal-Chr20 16956512 16957174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1244 2 220 C2H2 Transcription Factor Family AT5G10970 39.831 1.31e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal20g1244 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1244 - - gmx:100816861 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1244 20 16956512 16957174 Lal1g1221 1 13468103 13468759 LSH