Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1239 ATGGCTAGACCCCAACAACGTTATAGAGGTGTTCGCCAAAGACATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCTGTGTTGAAGACTAGAATATGGTTAGGAACCTTTGAAACAGCAGAAGATGCAGCTAGAGCATATGATGAAGCAGCAAAGTTAATGTGTGGTCCAAAAGCAAGAACCAATTTTCCACAAAACCCAAATGGATCATCACAATCTTCTTCATCATCATCGTCATCATCGAAGTTACTATCTGCCACTTTAACAGCAAAGTTACACAAGTGTCACATGGCCTCTCTTTCACTTCAAATGGCTAAGCAAAAACAACCACAGAAAGAGCCTCAAAAAGCATCATCACTAAGGTCCAATTCATTATTTAACCCTAGCAATAATAATAATAATAATAATAATAATAATGCTATTGTTGGAACAAGTGGTGAGAGTGGTTTTAGATGGGTAGAAGGGAATAATATTAATTGGGTTAGGGTTGAAGATCAAGTTGAAGTTTCACAGCAACAATTTCAGCAAGTTCTTCAAGATGATCACATAGAGCAGATGATACAAGAGTTGCTTGATTTTGGGTCAATTGAGCTTTGTGGCTCAGCTTAG 609 0.3859 MARPQQRYRGVRQRHWGSWVSEIRHPVLKTRIWLGTFETAEDAARAYDEAAKLMCGPKARTNFPQNPNGSSQSSSSSSSSSKLLSATLTAKLHKCHMASLSLQMAKQKQPQKEPQKASSLRSNSLFNPSNNNNNNNNNNAIVGTSGESGFRWVEGNNINWVRVEDQVEVSQQQFQQVLQDDHIEQMIQELLDFGSIELCGSA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1239 202 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lal20g1239 202 PANTHER ETHYLENE RESPONSE FACTOR 1 200 - -
Lal20g1239 202 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lal20g1239 202 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Lal20g1239 202 MobiDBLite consensus disorder prediction 103 143 - -
Lal20g1239 202 MobiDBLite consensus disorder prediction 61 82 - -
Lal20g1239 202 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lal20g1239 202 MobiDBLite consensus disorder prediction 58 82 - -
Lal20g1239 202 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Lal20g1239 202 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lal20g1239 202 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lal20g1239 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 200 - -
Lal20g1239 202 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1239 Lal-Chr20 16915314 16916677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1239 1 199 AP2-EREBP Transcription Factor Family AT5G25190 57.286 7.07e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal20g1239 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1239 - - gmx:100777851 225.713