Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1238 ATGGATACCATGTTAGAGTTAAAGAAAGAGAACATTGATCTTGAGAAAATACCTCTGGATCAAGTTTTTGTACAACTGAAATGCACAAAGGAGGGTCTTACAAATGAGGAAGGGCAAAGGAGGATGGAAATTTTTGGGCCCAACAAGTTGGAAGAAAAGAAGGAAAATAAGTTTCTGAAATTCTTGGGCTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATTGCTTTGGCAAATGGAGGGGGCCAGCCACCAGATTGGCAAGACTTTGTTGGAATAATAGCATTGCTTGTTATTAACTCCACCATTAGTTTTATTGAAGAGAACAATGCAGGAAATGCTGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACCAAGCAAGGAGAGATTGAGGCTGTTGTGATTGCTACCGGTGTACATACCTTCTTCGGTAAGGCTGCTCACTTGGTTGACAGCACTAACCAAGTAGGCCACTTTCAAAAGGCCAGAGATGGCATTAGAGAGGTGCATTTCCTTCCCTTTAATCCGGTGGACAAGCGTACAGCCATAACATACATAGACGAACGCGGCAATTGGCACCGAGTAAGCAAAGGAGCACCAGAGCAGATTATAGACCTATGCAATGTTAGGCCAGATGTGAAGAAAAAAGCTCATTCCATAATTGACAAATTTGCCGAAAGAGGTCTTCGTTCTCTTGCTGTTGCAAAACAAGAAGTTCCAGAGAAGACAAAGGAGAGTCCAGGAGCACCATGGCAATTTGTTGGTCTCTTGCCTCTCTTCGATCCACCAAGGCACGACAGTGCAGAGACTATTCGCCGAGCTCTTCATCTTGGAGTCAATGTTAAGATGATCACAGGTGATCAGCTAGCTATTGGTAAGGAAACCGGTCGTAGGCTTGGCATGGGAAGTAACATGTACCCGTCTTCGTCTCTCCTTGGTGAGGACAAGGATGCGTCTATTGCTGGTCTTCCAATTGATGAGCTTATTGAGAAGGCTGATGGATTTGCTGGTGTCTTCCCTGAACACAAATATGAGATTGTGAAGAGGCTCCAAGATAGAAAACACATATGTGGTATGACAGGTGATGGTGTCAATGATGCTCCAGCCCTGAAAAAGGCAGATATTGGAATTGCAGTCGCTGATGCAACTGATGCAGCTCGTGGCGCATCTGACATAGTCCTGACTGAACCCGGTTTGAGTGTGATTATAAGTGCAGTCTTGACAAGCAGAGCAATTTTCCAAAGAATGAAAAACTATACCATTTATGCCGTTTCCATAACAATCCGTATTGTGCTAGGCTTTTTGCTGTTAGCTCTTATCTGGAAATTCGATTTCTCGCCATTTATGGTTTTGATCATTGCCATACTAAATGATGGAACGATTATGACCATTTCCAAGGACAGGGTAAAGCCATCTCCTTTGCCAGATTCATGGAAACTGAATGAGATTTTCGCCACAGGCATAGTGCTAGGCACCTACCTTGCTATCATGACCGTTGTCTTCTTCTGGGGCGCTCATTCAACGGATTTCTTCTCAGAAAAATTCGGGGTTCGACCTATTAGAGATAGCGAGGGCGAGCTTACAGCAGCTATTTACCTTCAAGTGAGTATTGTAAGCCAGGCTCTGATCTTCGTTACTCGGTCGAGAAGTTGGTCTTTCGTGGAACGCCCTGGCCTCTTACTTTGTACAGCCTTTGTCATAGCACAACTGGTTGCCACACTCATAGCTGTCTATGCTGATTGGGAATTTGCAAAGATGAAAGGAATTGGTTGGGGTTGGGCTGGTGTTATTTGGCTCTACAGCATCATTTTCTACTTTCCTTTGGATGTTATTAAATTTGTCATCAGATATGTTTTGAGTGGCAAGGCATGGAAAAGCATTACTGAGAACAAGACCGCTTTTACATCGAAGAAGGATTACGGAAAGGAAGAGCGAGAAGCACAATGGGCTACAGCGCAACGCACATTGCATGGACTAAATCCTCCCACAACACAAAATATATTGGATGAACACACTAGCTATAGTGAACTTTCTGAAATTGCTGAACAAGCCAAAAAGCGTGCTGAAATTGCAAGGTTGAGGGAGCTTCACACACTGAAGGGTCATGTTGAATCTGTAGTGAAACTAAAGGGACTTGACATTGATACAATTCAGCAGCATTATACAGTTTGA 2193 0.4387 MDTMLELKKENIDLEKIPLDQVFVQLKCTKEGLTNEEGQRRMEIFGPNKLEEKKENKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMAGLAPKTKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKARDGIREVHFLPFNPVDKRTAITYIDERGNWHRVSKGAPEQIIDLCNVRPDVKKKAHSIIDKFAERGLRSLAVAKQEVPEKTKESPGAPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEDKDASIAGLPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGTYLAIMTVVFFWGAHSTDFFSEKFGVRPIRDSEGELTAAIYLQVSIVSQALIFVTRSRSWSFVERPGLLLCTAFVIAQLVATLIAVYADWEFAKMKGIGWGWAGVIWLYSIIFYFPLDVIKFVIRYVLSGKAWKSITENKTAFTSKKDYGKEEREAQWATAQRTLHGLNPPTTQNILDEHTSYSELSEIAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1238 730 SMART Cation_ATPase_N_a_2 13 85 IPR004014 -
Lal20g1238 730 SUPERFAMILY Calcium ATPase, transmembrane domain M 12 626 IPR023298 -
Lal20g1238 730 SUPERFAMILY HAD-like 222 414 IPR036412 -
Lal20g1238 730 PRINTS P-type cation-transporting ATPase superfamily signature 262 273 - -
Lal20g1238 730 PRINTS P-type cation-transporting ATPase superfamily signature 284 294 - -
Lal20g1238 730 PRINTS P-type cation-transporting ATPase superfamily signature 367 386 - -
Lal20g1238 730 PRINTS P-type cation-transporting ATPase superfamily signature 390 402 - -
Lal20g1238 730 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 133 168 - -
Lal20g1238 730 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 168 702 - -
Lal20g1238 730 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 3 133 - -
Lal20g1238 730 Coils Coil 681 701 - -
Lal20g1238 730 PRINTS H+-transporting ATPase (proton pump) signature 224 242 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g1238 730 PRINTS H+-transporting ATPase (proton pump) signature 339 355 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g1238 730 PRINTS H+-transporting ATPase (proton pump) signature 367 383 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g1238 730 PRINTS H+-transporting ATPase (proton pump) signature 398 423 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g1238 730 PRINTS H+-transporting ATPase (proton pump) signature 539 560 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g1238 730 Gene3D - 64 134 - -
Lal20g1238 730 Gene3D - 369 625 - -
Lal20g1238 730 Gene3D - 679 730 - -
Lal20g1238 730 Pfam Cation transporter/ATPase, N-terminus 16 79 IPR004014 -
Lal20g1238 730 Gene3D - 135 273 IPR023299 GO:0000166
Lal20g1238 730 PANTHER CALCIUM-TRANSPORTING ATPASE 133 168 - -
Lal20g1238 730 PANTHER CALCIUM-TRANSPORTING ATPASE 168 702 - -
Lal20g1238 730 PANTHER CALCIUM-TRANSPORTING ATPASE 3 133 - -
Lal20g1238 730 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 342 453 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal20g1238 730 Pfam haloacid dehalogenase-like hydrolase 188 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1238 Lal-Chr20 16873127 16881644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1238 167 730 Primary Pumps ATPases AT2G18960 83.688 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1238 K01535 - gmx:100818997 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1238 20 16873127 16881644 Lal18g0051 18 377810 384430 LSH