Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1234 ATGGCGGTTTCACTGTGGAGAGCTCGCACAGCTTCGTCAGCACTGTCTAACCTCAACAATTTCACCAATGCCATACGCTGTCGTTTCTTCTCTTCTGATGTTACAAACACGAACCCTCATGATCCACGCGATAGTATCATGAATCAGATGATGTATTCTGACATCAATTCACAGATTGGGAGTTCCATGCCACTCTCTTCCATGCGAATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCAGCTGGAACTAATGCAAAGATCTTAAAGGATCCCACAGCACCATACTGTTTAATCCAACTCCCCTCAGGTGTTAAAAAGTTGATTGATTCTCGATGCAGGGCCACCATTGGTACAGTGTCCAATCCAAGCCATGGAGATCGAAAGCTTAGGAAAGCCGGACATAGCCGATGGCTTGGTCGAAGACCGGTTGTGAGAGGAGTGGCCATGAATCCTGTTGATCATCCACATGGTGGTGGAGAGGGTAAGAGCAAGAGTGCTGGGAAATTTGGGAAAGGATCTCGTACTCCTTGGGGCAAGCCGACTAAGGGTGGCTACAAGACTGGACCGCTGAAGCGAAGAAAGTAA 615 0.4813 MAVSLWRARTASSALSNLNNFTNAIRCRFFSSDVTNTNPHDPRDSIMNQMMYSDINSQIGSSMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKDPTAPYCLIQLPSGVKKLIDSRCRATIGTVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSAGKFGKGSRTPWGKPTKGGYKTGPLKRRK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1234 204 PANTHER RIBOSOMAL PROTEIN L2 47 204 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal20g1234 204 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 47 204 - -
Lal20g1234 204 ProSitePatterns Ribosomal protein L2 signature. 152 163 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lal20g1234 204 Pfam Ribosomal Proteins L2, C-terminal domain 59 188 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal20g1234 204 MobiDBLite consensus disorder prediction 159 204 - -
Lal20g1234 204 Gene3D - 48 129 IPR014722 -
Lal20g1234 204 Gene3D Ribosomal protein L2, domain 3 130 204 IPR014726 -
Lal20g1234 204 SMART Ribosomal_L2_C_2 57 190 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal20g1234 204 SUPERFAMILY Translation proteins SH3-like domain 59 194 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1234 Lal-Chr20 16815037 16817268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1234 49 169 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 42.636 5.67e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1234 - - lang:109347761 377.481